G79441


Basic Information

Item Value
gene id G79441
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000013
NCBI id null
chromosome length 12551977
location 2768477 ~ 2769076 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU90485
AAGCATTCTTATCTAGTTCTGGCATGAAACTCTAGATGGCACAGGGTGATAGGTCCTTAACTCATTTGGTAGTGATCACATCATTATCTGCTTAACACAGCTAATTGGTTGCTGTTGCATCAGCAGCCAATGAGCTGTGGCTCAACATTCAAACAAATACCGGTATTTGTTTGAATTTCTTCTTTCAGATGAACACAATCTGAGTTATATTAATAAATATCCTGACACATTTAAGCTTTATAATGGTAGTGAACAGAACCAACAAGTGTTAGCAATCTGCAGCGCGCTTTCAGAAACCCTCCACCTTCCCCAGCTCCACCTGTATAGATCTGCTTAATTCTTGCATGTTACATGTGCAGCAGCATGTCTTACATGCTCACAGAAATGTCTGTGAATGTATTGGCAGTAGCAAGTCTCGGCAGAAGCAGCGTAGCAGATCTATTCCGCCAAGACCAAATACAGTAACATTGCCATATCCATTACAATCCCAATCTCTATTACCATACCAAACTCTCCGAGAGTTGTCATGACAGAAATTTATTTATTTTTTAAAATCTTACTGACCCCAAACTTTTGAGCGGTAGTGTATGTGCATTATCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU90485 True 600 lncRNA 0.40 1 2768477 2769076

Neighbor

gene id symbol gene type direction distance location
CI01000013_02709871_02711692 NA coding upstream 55978 2709453 ~ 2712499 (+)
CI01000013_02692887_02696848 NA coding upstream 71457 2692443 ~ 2697020 (+)
CI01000013_02685665_02686639 NA coding upstream 81642 2682467 ~ 2686835 (+)
CI01000013_02666598_02669821 NUDT21, CPSF5, NUDT21.L coding upstream 98656 2666598 ~ 2669821 (+)
CI01000013_02656037_02664145 HSF4 coding upstream 104079 2656037 ~ 2664398 (+)
CI01000013_02815238_02816664 NA coding downstream 46104 2815180 ~ 2817323 (+)
CI01000013_02859975_02863496 TMEM170A coding downstream 90899 2859975 ~ 2863946 (+)
CI01000013_03019688_03044233 TSNAXIP1, PARD6A coding downstream 250612 3019688 ~ 3044374 (+)
CI01000013_03087239_03094115 TSNAXIP1 coding downstream 318163 3087239 ~ 3094458 (+)
CI01000013_03121085_03147061 EDC4 coding downstream 352009 3121085 ~ 3147622 (+)
G79440 NA non-coding upstream 738 2767453 ~ 2767739 (+)
G79397 NA non-coding upstream 19848 2734104 ~ 2748629 (+)
G79402 NA non-coding upstream 73352 2694712 ~ 2695125 (+)
G79358 NA non-coding upstream 170106 2595938 ~ 2598371 (+)
G79344 NA non-coding upstream 194954 2572701 ~ 2573523 (+)
G79442 NA non-coding downstream 401 2769477 ~ 2769829 (+)
G79443 NA non-coding downstream 946 2770022 ~ 2770347 (+)
G79444 NA non-coding downstream 1466 2770542 ~ 2771024 (+)
G79445 NA non-coding downstream 2006 2771082 ~ 2771351 (+)
G79448 NA non-coding downstream 6156 2775232 ~ 2775569 (+)
G79309 NA other upstream 301306 2466765 ~ 2467171 (+)
G77695 NA other upstream 1815508 946521 ~ 952969 (+)
G77533 NA other upstream 2058928 708833 ~ 709549 (+)
G80062 NA other downstream 814932 3584008 ~ 3584784 (+)
CI01000013_04051081_04064651 NA other downstream 1295857 4050837 ~ 4065829 (+)
G80845 NA other downstream 2066002 4835078 ~ 4836232 (+)
CI01000013_06050285_06059640 NA other downstream 3287222 6049864 ~ 6060269 (+)
CI01000013_06076169_06080164 NA other downstream 3309486 6075400 ~ 6081684 (+)

Expression


Co-expression Network