G79468


Basic Information

Item Value
gene id G79468
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000013
NCBI id null
chromosome length 12551977
location 2797984 ~ 2799462 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU90512
CTTTTGTTGTAACACACTTACAATAGATGTCTATGGGGCAAGTATTTCAGAAGGTTTTAAACTTAAATTACTCTTTTAAAATGTGTGTAATTTAATATGTAAAATTGTTTTAAGGTGGGTTTTAAAGTCATCATGAAATCAAAATAGACCCTATTTACTTTGTTAGCGCATATTACTAGTATTGTGGTGAACAATTAATCCGTTCAAGTTAATATAAAATCAGATTTAATCAAAATCTGAAAAGTTACTTCCGGTCTGGGTTTTTAGGGGTTTCAATTTTAGACGCAAAATTTATGGGAGAGTATTTAAATGAATCATGCAAGGTGATTTACTAAGGTTTGCGCTAGTCAATTTACTGGTATTTGCGCTATTATTTACCGCCCAAAAAAGCAATGTCCAGATGCTAATTTGCGCTGCTCTTGGTAGATTGCGTTGGTCATTATTGAAATGATCTGGCTGCTTCTGTGTTCTTTAATTTGCACGTCGTCTGTAGATCACACACAGAAATTTCCACTCCCATTGGCGCTTTTTTGGAATTGCGCTCTCGCGCTAATGTGCCATGTTTAGTAAATCTGGCCCTTATTTGTTTGTACAAACTTTGGGATGAGTTAAAATTATTTCTTGTGGTATGTTGTCGATAACTTGCATTTAACCAGGAAAATCCCTTTAATACATTATGGTTGTATTCTTATCAAGTATTTTCAGACTTTGAATTAGGCACTGCACATTAGGTGGCCTCTCTTTCTCTCTCTGCATTTGTTTATCTAGCTGTTCTACAGTCAACATTGCCTACTCTTCTCCCTGTGTCCATTAGCGAGCATGTGATTAGCATTCCAGCAAAACTCCCTTAACAAGCCCTCGTCTGAGCACACAAACACTCGCATAACTAAACACCACATATACAAGCACATAAACACAAACTGTATTTCAGATACACAAGTTCAGTCTTTTCAGCAGCCAGTCAGGACAAGGGAATGGTCCATTTCCTAACCCATAACACAGAGTTGAGTGAGCATGCCCAGTGCAGGACCGCTGAGAGATGGTGAGGTGATGATGATAAGGAAACTCACATCATCATGTCTTGTTCTTAATACTGCTGCAGACAGCTCACACGGCCCCAACGACCCTCCTCTAGTTTGACCAGTACAAGAGTAAATCCAGGCCAAGAAAGGTTTGTAATCGTGCCGAACCAAGCTCAAGTGGAAATATAACAGGGACCACTCCTTACCGTTCGGCCCTATGGTGGAAAAGTGGCTTTGGAGAAGTTTCCACCGTTCTTCCATGAATTTCGTCTGTCTCAATTGCTTTCGACCCATCATGTAATGACTGACTCGATAATGGTGACATTAGATTTCTGTTTGGACCGTACCATCTGTTTTAGGACTCATTGTTTATATAAAAAACTCACTTGATTGTTATAAAATTTGCAAAAGGAGTGTTTGGACAGCCAAAACAAAATACTTTTACACAGTACTATAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU90512 True 1479 lncRNA 0.39 1 2797984 2799462

Neighbor

gene id symbol gene type direction distance location
CI01000013_02709871_02711692 NA coding upstream 85485 2709453 ~ 2712499 (+)
CI01000013_02692887_02696848 NA coding upstream 100964 2692443 ~ 2697020 (+)
CI01000013_02685665_02686639 NA coding upstream 111149 2682467 ~ 2686835 (+)
CI01000013_02666598_02669821 NUDT21, CPSF5, NUDT21.L coding upstream 128163 2666598 ~ 2669821 (+)
CI01000013_02656037_02664145 HSF4 coding upstream 133586 2656037 ~ 2664398 (+)
CI01000013_02815238_02816664 NA coding downstream 15718 2815180 ~ 2817323 (+)
CI01000013_02859975_02863496 TMEM170A coding downstream 60513 2859975 ~ 2863946 (+)
CI01000013_03019688_03044233 TSNAXIP1, PARD6A coding downstream 220226 3019688 ~ 3044374 (+)
CI01000013_03087239_03094115 TSNAXIP1 coding downstream 287777 3087239 ~ 3094458 (+)
CI01000013_03121085_03147061 EDC4 coding downstream 321623 3121085 ~ 3147622 (+)
G79467 NA non-coding upstream 1408 2796329 ~ 2796576 (+)
G79466 NA non-coding upstream 2181 2795091 ~ 2795803 (+)
G79465 NA non-coding upstream 4099 2793457 ~ 2793885 (+)
G79464 NA non-coding upstream 5083 2792686 ~ 2792901 (+)
G79462 NA non-coding upstream 6813 2790805 ~ 2791171 (+)
G79478 NA non-coding downstream 13225 2812687 ~ 2812889 (+)
G79479 NA non-coding downstream 13709 2813171 ~ 2813508 (+)
G79481 NA non-coding downstream 16342 2815804 ~ 2816109 (+)
G79484 NA non-coding downstream 17963 2817425 ~ 2817690 (+)
G79309 NA other upstream 330813 2466765 ~ 2467171 (+)
G77695 NA other upstream 1845015 946521 ~ 952969 (+)
G77533 NA other upstream 2088435 708833 ~ 709549 (+)
G80062 NA other downstream 784546 3584008 ~ 3584784 (+)
CI01000013_04051081_04064651 NA other downstream 1265471 4050837 ~ 4065829 (+)
G80845 NA other downstream 2035616 4835078 ~ 4836232 (+)
CI01000013_06050285_06059640 NA other downstream 3256836 6049864 ~ 6060269 (+)
CI01000013_06076169_06080164 NA other downstream 3279100 6075400 ~ 6081684 (+)

Expression


Co-expression Network