G79478


Basic Information

Item Value
gene id G79478
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000013
NCBI id null
chromosome length 12551977
location 2812687 ~ 2812889 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU90522
GAACAATAGAAAGATACAATGAACAATAGATAAATAGAATGAAGGATAGACAGGGATGGACAGAACACTCTTAAAAATAAAGGTTCCAAACAGTTTTTTTGCAGCAATGCCATAGAAGGACGGCCATTTTGAACCAATTTGGGTACCCCCAAAAAAACCTTTCAGTGAACAGCTCCTAAAAGAAGCATTTTTTCCTAATGTGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU90522 True 203 lncRNA 0.36 1 2812687 2812889

Neighbor

gene id symbol gene type direction distance location
CI01000013_02709871_02711692 NA coding upstream 100188 2709453 ~ 2712499 (+)
CI01000013_02692887_02696848 NA coding upstream 115667 2692443 ~ 2697020 (+)
CI01000013_02685665_02686639 NA coding upstream 125852 2682467 ~ 2686835 (+)
CI01000013_02666598_02669821 NUDT21, CPSF5, NUDT21.L coding upstream 142866 2666598 ~ 2669821 (+)
CI01000013_02656037_02664145 HSF4 coding upstream 148289 2656037 ~ 2664398 (+)
CI01000013_02815238_02816664 NA coding downstream 2291 2815180 ~ 2817323 (+)
CI01000013_02859975_02863496 TMEM170A coding downstream 47086 2859975 ~ 2863946 (+)
CI01000013_03019688_03044233 TSNAXIP1, PARD6A coding downstream 206799 3019688 ~ 3044374 (+)
CI01000013_03087239_03094115 TSNAXIP1 coding downstream 274350 3087239 ~ 3094458 (+)
CI01000013_03121085_03147061 EDC4 coding downstream 308196 3121085 ~ 3147622 (+)
G79468 NA non-coding upstream 13225 2797984 ~ 2799462 (+)
G79467 NA non-coding upstream 16111 2796329 ~ 2796576 (+)
G79466 NA non-coding upstream 16884 2795091 ~ 2795803 (+)
G79465 NA non-coding upstream 18802 2793457 ~ 2793885 (+)
G79464 NA non-coding upstream 19786 2792686 ~ 2792901 (+)
G79479 NA non-coding downstream 282 2813171 ~ 2813508 (+)
G79481 NA non-coding downstream 2915 2815804 ~ 2816109 (+)
G79484 NA non-coding downstream 4536 2817425 ~ 2817690 (+)
G79485 NA non-coding downstream 5192 2818081 ~ 2818490 (+)
G79309 NA other upstream 345516 2466765 ~ 2467171 (+)
G77695 NA other upstream 1859718 946521 ~ 952969 (+)
G77533 NA other upstream 2103138 708833 ~ 709549 (+)
G80062 NA other downstream 771119 3584008 ~ 3584784 (+)
CI01000013_04051081_04064651 NA other downstream 1252044 4050837 ~ 4065829 (+)
G80845 NA other downstream 2022189 4835078 ~ 4836232 (+)
CI01000013_06050285_06059640 NA other downstream 3243409 6049864 ~ 6060269 (+)
CI01000013_06076169_06080164 NA other downstream 3265673 6075400 ~ 6081684 (+)

Expression


Co-expression Network