G79541


Basic Information

Item Value
gene id G79541
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000013
NCBI id null
chromosome length 12551977
location 2878227 ~ 2878450 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU90589
GTCAGGTTGAGACAGTGATCCCAGAATTCCACAGGCTTCTGTCTAGGTTTCCCTGGTGGCAAAGCTACAAGCTCTATGGAAGTGATTAAATCCAACGTGATAGCCACTTTCCACAAATAGGGCCTAAAGAACTTAACAAATGGTCAGTGAAATGTGGTGCTTAACTTGCAAAAAATGCTGATTACCAAATAGAAGTTGCAAACCTCATATAAAATGAATATAAG

Function

NR:

description
PREDICTED: oligodendrocyte transcription factor 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU90589 True 224 lncRNA 0.40 1 2878227 2878450

Neighbor

gene id symbol gene type direction distance location
CI01000013_02859975_02863496 TMEM170A coding upstream 14281 2859975 ~ 2863946 (+)
CI01000013_02815238_02816664 NA coding upstream 60904 2815180 ~ 2817323 (+)
CI01000013_02709871_02711692 NA coding upstream 165728 2709453 ~ 2712499 (+)
CI01000013_02692887_02696848 NA coding upstream 181207 2692443 ~ 2697020 (+)
CI01000013_02685665_02686639 NA coding upstream 191392 2682467 ~ 2686835 (+)
CI01000013_03019688_03044233 TSNAXIP1, PARD6A coding downstream 141238 3019688 ~ 3044374 (+)
CI01000013_03087239_03094115 TSNAXIP1 coding downstream 208789 3087239 ~ 3094458 (+)
CI01000013_03121085_03147061 EDC4 coding downstream 242635 3121085 ~ 3147622 (+)
CI01000013_03186643_03190449 NRN1LA coding downstream 308193 3186643 ~ 3190677 (+)
CI01000013_03225714_03236717 FAN1 coding downstream 347264 3225714 ~ 3237045 (+)
G79540 NA non-coding upstream 439 2876963 ~ 2877788 (+)
G79517 NA non-coding upstream 3224 2874014 ~ 2875003 (+)
G79523 NA non-coding upstream 52909 2825092 ~ 2825318 (+)
G79485 NA non-coding upstream 59737 2818081 ~ 2818490 (+)
G79484 NA non-coding upstream 60537 2817425 ~ 2817690 (+)
G79542 NA non-coding downstream 895 2879345 ~ 2880489 (+)
G79543 NA non-coding downstream 2180 2880630 ~ 2881456 (+)
G79544 NA non-coding downstream 3031 2881481 ~ 2881729 (+)
G79545 NA non-coding downstream 3316 2881766 ~ 2882025 (+)
G79495 NA non-coding downstream 5079 2883529 ~ 2883898 (+)
G79309 NA other upstream 411056 2466765 ~ 2467171 (+)
G77695 NA other upstream 1925258 946521 ~ 952969 (+)
G77533 NA other upstream 2168678 708833 ~ 709549 (+)
G80062 NA other downstream 705558 3584008 ~ 3584784 (+)
CI01000013_04051081_04064651 NA other downstream 1186483 4050837 ~ 4065829 (+)
G80845 NA other downstream 1956628 4835078 ~ 4836232 (+)
CI01000013_06050285_06059640 NA other downstream 3177848 6049864 ~ 6060269 (+)
CI01000013_06076169_06080164 NA other downstream 3200112 6075400 ~ 6081684 (+)

Expression


Co-expression Network