G79542


Basic Information

Item Value
gene id G79542
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000013
NCBI id null
chromosome length 12551977
location 2879345 ~ 2880489 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU90590
GTGGAAACAAGCTTCCAAAAAGACAATCTAATTTTCATGGTAGGTCAATTTTATGTGAGCTAATAGTTTATCACTTCTTTGCATGTAATGTTTTATAAATAAAGGACACTAAAATTTACTGTATTTGTAGAAATTGTCATGGAGTTTCCTTCTCCTGAAACACTTTCTTAAAGGGTTAGTTCAACCAAAAATTAAATTTCTCTCATTAATTACTCATTCTCATGTCGTTCCAAACCCGTAAGACCTTTGTTCATCTTTGGAAGACATATTAAGATATTTTGATGAAATCTGAGAGGTTTTTTATCCTCCATTGAAAGCCACAAAATTACCACATTCAAGGTCCAGAAAAGTGGGGTAATTAATTACAGAAATTTCATTTTTGGGTGAACTAACTCTTTAAGAATTCCATTCTGTGACTGGACATCAAATTGTTGAAGACACTGGTCATTGTAGGTTGGAAATGGTGAGCATCCTTGTGTAATAAAGCGCTGTTCATGTGTGTATGGGTGTGTAATACTGTGCAGAGGTAATAAAAGAAATGCTTATGCAGCCATCATAAAGGCAGGGGCCGAGAGAATTTAAAAGGGATACAGGGACATCGCTAAAACTCACAGAGCCCCGGACACATTTTTTATGGGTGGGTCATCTTTCCTTGAGACCAATGAGTAGGCAGTGCCATAGAGGCACCCCTCATCGCAGGGCCTGGTTGTCCCCCACTGCTGAAAGCCCAGCAGGGACATACAGGAAAAAAAGCACACACACATATACTGGACCATCAGAGCATTATCTCTTCTCCAGTCACATGAGCTTCTCCCTGAGGCGCCACCTGTCATTGGGTTTCCACCAGCCAAGGAGTATGACCGGCCGTCACACAATATGGACACACACCCTCGCCAACAGATCACGCTGACAGGAATAAACATATAACACACATACTCATTCAGGTGATCAGAGGAAATGACAGGAGTGTTTTCATCCCTCCGTGCTCATGTCTGTGATAACAGTGGCGCCAAACTCTCCAGAGAGTGTCTGTTCTGAAAAAGCTGCCTGCAAAATGACCTCACACACACACAATTACACAGCGTTAATAAGGATAAAGGTCCGTTCACACCAAGGATGATAGCTATAACGATATTGGTTTAAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU90590 True 1145 lncRNA 0.41 1 2879345 2880489

Neighbor

gene id symbol gene type direction distance location
CI01000013_02859975_02863496 TMEM170A coding upstream 15399 2859975 ~ 2863946 (+)
CI01000013_02815238_02816664 NA coding upstream 62022 2815180 ~ 2817323 (+)
CI01000013_02709871_02711692 NA coding upstream 166846 2709453 ~ 2712499 (+)
CI01000013_02692887_02696848 NA coding upstream 182325 2692443 ~ 2697020 (+)
CI01000013_02685665_02686639 NA coding upstream 192510 2682467 ~ 2686835 (+)
CI01000013_03019688_03044233 TSNAXIP1, PARD6A coding downstream 139199 3019688 ~ 3044374 (+)
CI01000013_03087239_03094115 TSNAXIP1 coding downstream 206750 3087239 ~ 3094458 (+)
CI01000013_03121085_03147061 EDC4 coding downstream 240596 3121085 ~ 3147622 (+)
CI01000013_03186643_03190449 NRN1LA coding downstream 306154 3186643 ~ 3190677 (+)
CI01000013_03225714_03236717 FAN1 coding downstream 345225 3225714 ~ 3237045 (+)
G79541 NA non-coding upstream 895 2878227 ~ 2878450 (+)
G79540 NA non-coding upstream 1557 2876963 ~ 2877788 (+)
G79517 NA non-coding upstream 4342 2874014 ~ 2875003 (+)
G79523 NA non-coding upstream 54027 2825092 ~ 2825318 (+)
G79485 NA non-coding upstream 60855 2818081 ~ 2818490 (+)
G79543 NA non-coding downstream 141 2880630 ~ 2881456 (+)
G79544 NA non-coding downstream 992 2881481 ~ 2881729 (+)
G79545 NA non-coding downstream 1277 2881766 ~ 2882025 (+)
G79495 NA non-coding downstream 3040 2883529 ~ 2883898 (+)
G79546 NA non-coding downstream 4780 2885269 ~ 2885499 (+)
G79309 NA other upstream 412174 2466765 ~ 2467171 (+)
G77695 NA other upstream 1926376 946521 ~ 952969 (+)
G77533 NA other upstream 2169796 708833 ~ 709549 (+)
G80062 NA other downstream 703519 3584008 ~ 3584784 (+)
CI01000013_04051081_04064651 NA other downstream 1184444 4050837 ~ 4065829 (+)
G80845 NA other downstream 1954589 4835078 ~ 4836232 (+)
CI01000013_06050285_06059640 NA other downstream 3175809 6049864 ~ 6060269 (+)
CI01000013_06076169_06080164 NA other downstream 3198073 6075400 ~ 6081684 (+)

Expression


Co-expression Network