G79543


Basic Information

Item Value
gene id G79543
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000013
NCBI id null
chromosome length 12551977
location 2880630 ~ 2881456 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU90591
TGCAGGTCTCGTACACGGACGATGACATCATGTAACAGTATTGTATATAAAAATGGCTACCAAATGACTATAGATCATCCTATAATTTACCAACCACACATACTAACTACACTAAAGTAATTTTTACATATCTAATTACAGCAGATACTAAATACTATGATATGTTTTTTGTGGACACTAATGTGATGGTACTACTGTGGTATTCATAGACAAAACCTGGTAAAAGAATATGGTGATCCACATTTCACAGTACATTACCATTATTTATACGCACGGACACTACTATGATGGTAATACCATGTTTTTATTGGCATACCATGGGGTACTATGGTAAATATAGGTGTAACCACATGTACATTGCATCACAGTACTATGGTATTACCATGATTTTTGTGGACACTACCGCAACAGCATTTTTTGACACACCTTGTGATACTATGGTAAATAAAGGTGGTTATCATATGTAGATGGTATGACAGAACAATGATATTGCCAAGGTTTTTGTGGACACTACGGTGACTGTACTATCAGTATTTTTACATACCTTGAGATACTATGGTAAATAAAGGTGGTAATCATATGTACATGGTAACATAGTGCTATTGTATTACCATGATTTTTGAGGACACTCAAAAATCATGCACTATGGTATTGTTAGACACACCTTGGAGCACCATGGTAAACGAATACAGTGATATACATCATACCACAGTACAGTACTATGGTATTTTCATTATTTGTGGGAACACTACCATGGTATTTTTGAAATACCTTAGGGGAAAACTAGGGTTAATAAAGGTGGTAATCATTTGTACATGGTATCACAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU90591 True 827 lncRNA 0.35 1 2880630 2881456

Neighbor

gene id symbol gene type direction distance location
CI01000013_02859975_02863496 TMEM170A coding upstream 16684 2859975 ~ 2863946 (+)
CI01000013_02815238_02816664 NA coding upstream 63307 2815180 ~ 2817323 (+)
CI01000013_02709871_02711692 NA coding upstream 168131 2709453 ~ 2712499 (+)
CI01000013_02692887_02696848 NA coding upstream 183610 2692443 ~ 2697020 (+)
CI01000013_02685665_02686639 NA coding upstream 193795 2682467 ~ 2686835 (+)
CI01000013_03019688_03044233 TSNAXIP1, PARD6A coding downstream 138232 3019688 ~ 3044374 (+)
CI01000013_03087239_03094115 TSNAXIP1 coding downstream 205783 3087239 ~ 3094458 (+)
CI01000013_03121085_03147061 EDC4 coding downstream 239629 3121085 ~ 3147622 (+)
CI01000013_03186643_03190449 NRN1LA coding downstream 305187 3186643 ~ 3190677 (+)
CI01000013_03225714_03236717 FAN1 coding downstream 344258 3225714 ~ 3237045 (+)
G79542 NA non-coding upstream 141 2879345 ~ 2880489 (+)
G79541 NA non-coding upstream 2180 2878227 ~ 2878450 (+)
G79540 NA non-coding upstream 2842 2876963 ~ 2877788 (+)
G79517 NA non-coding upstream 5627 2874014 ~ 2875003 (+)
G79523 NA non-coding upstream 55312 2825092 ~ 2825318 (+)
G79544 NA non-coding downstream 25 2881481 ~ 2881729 (+)
G79545 NA non-coding downstream 310 2881766 ~ 2882025 (+)
G79495 NA non-coding downstream 2073 2883529 ~ 2883898 (+)
G79546 NA non-coding downstream 3813 2885269 ~ 2885499 (+)
G79548 NA non-coding downstream 7083 2888539 ~ 2889566 (+)
G79309 NA other upstream 413459 2466765 ~ 2467171 (+)
G77695 NA other upstream 1927661 946521 ~ 952969 (+)
G77533 NA other upstream 2171081 708833 ~ 709549 (+)
G80062 NA other downstream 702552 3584008 ~ 3584784 (+)
CI01000013_04051081_04064651 NA other downstream 1183477 4050837 ~ 4065829 (+)
G80845 NA other downstream 1953622 4835078 ~ 4836232 (+)
CI01000013_06050285_06059640 NA other downstream 3174842 6049864 ~ 6060269 (+)
CI01000013_06076169_06080164 NA other downstream 3197106 6075400 ~ 6081684 (+)

Expression


Co-expression Network