G79508


Basic Information

Item Value
gene id G79508
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000013
NCBI id null
chromosome length 12551977
location 2975598 ~ 2999749 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU90554
CATACAGCCATCTGCCAGAAGCTAGTTATTATAGTTAACAATGTTTTAAATATGGATTTTTTTTTTTTTTTTACAGTATAGAAAGAGAGTTTATTTTTATTACAACAAACGTAACAAAGTACATATCATCTTAAATAGAAGGACCTTCACATATTGTCTTGGACAAAGGGGGGACTTGGGGTCAAAAGGTTGAAAACTATTGCTCTACACTCATTTAACACTAGAGGGCGCACTGGACCCATGGATTTTTGAATGATTGACTATAATGTTAATGTTTACCAAATATTCACTAATTATCAGACCATGGCATTGAGTGGCTCTTACAGCCCATGATTCCTTTGTTATTGAACATAACTTTATTGTCCTTACTGGAAATTTGATTTGAGGAAGGGCATGTTGTGGTTGGCTTTGTCACATTTGGTTCTGTCTTTTAACTTTTCCTCATCTTCCTTTTTTTTTTTTACTTATTCATTCTCTTATTGCCTCACCGCTAATCTTATTATAATCGCTGATACTAAATTTGGAAAGTCTGTAATACAAATATCAGTTAGGGGAAAAATTTCAAAACATAGGAAACCTGTTTTTATGAGATCTTCCTCACATGCATTACACTGAGATAACAACTCATGTCTTACACTAGATGAAAAAAATTCACAGACAAACCGCAGACAGACAAAGATGTGGAAGTACATGTCAAACTTATGATGTGCAAACGACACACACAAGATGAGTTGTGCAATCACCAGGGGATGTTTTTGCCCTCCCAATCTAAAAGAGTTCCACTGTCTTTCTCGGTAACGCTTGTGATGACTTTCATCATACCGCTGATGCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU90554 True 832 lncRNA 0.35 2 2975598 2999749

Neighbor

gene id symbol gene type direction distance location
CI01000013_02859975_02863496 TMEM170A coding upstream 111652 2859975 ~ 2863946 (+)
CI01000013_02815238_02816664 NA coding upstream 158275 2815180 ~ 2817323 (+)
CI01000013_02709871_02711692 NA coding upstream 263099 2709453 ~ 2712499 (+)
CI01000013_02692887_02696848 NA coding upstream 278578 2692443 ~ 2697020 (+)
CI01000013_02685665_02686639 NA coding upstream 288763 2682467 ~ 2686835 (+)
CI01000013_03019688_03044233 TSNAXIP1, PARD6A coding downstream 19939 3019688 ~ 3044374 (+)
CI01000013_03087239_03094115 TSNAXIP1 coding downstream 87490 3087239 ~ 3094458 (+)
CI01000013_03121085_03147061 EDC4 coding downstream 121336 3121085 ~ 3147622 (+)
CI01000013_03186643_03190449 NRN1LA coding downstream 186894 3186643 ~ 3190677 (+)
CI01000013_03225714_03236717 FAN1 coding downstream 225965 3225714 ~ 3237045 (+)
G79548 NA non-coding upstream 86032 2888539 ~ 2889566 (+)
G79546 NA non-coding upstream 90099 2885269 ~ 2885499 (+)
G79495 NA non-coding upstream 91700 2883529 ~ 2883898 (+)
G79545 NA non-coding upstream 93573 2881766 ~ 2882025 (+)
G79544 NA non-coding upstream 93869 2881481 ~ 2881729 (+)
G79596 NA non-coding downstream 6232 3005981 ~ 3006270 (+)
G79598 NA non-coding downstream 11913 3011662 ~ 3012068 (+)
G79600 NA non-coding downstream 13462 3013211 ~ 3013753 (+)
G79601 NA non-coding downstream 47487 3047236 ~ 3047532 (+)
G79625 NA non-coding downstream 112864 3112613 ~ 3113067 (+)
G79309 NA other upstream 508427 2466765 ~ 2467171 (+)
G77695 NA other upstream 2022629 946521 ~ 952969 (+)
G77533 NA other upstream 2266049 708833 ~ 709549 (+)
G80062 NA other downstream 584259 3584008 ~ 3584784 (+)
CI01000013_04051081_04064651 NA other downstream 1065184 4050837 ~ 4065829 (+)
G80845 NA other downstream 1835329 4835078 ~ 4836232 (+)
CI01000013_06050285_06059640 NA other downstream 3056549 6049864 ~ 6060269 (+)
CI01000013_06076169_06080164 NA other downstream 3078813 6075400 ~ 6081684 (+)

Expression


Co-expression Network