G79588


Basic Information

Item Value
gene id G79588
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000013
NCBI id null
chromosome length 12551977
location 2987377 ~ 2988901 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU90636
CTCTTCTTTTTATAACAGTCTGCAAACGTCTGGGGACTGAGGAGACAAGTTGCTCAAGTTTAGGAATAGGAATGTTGTCCCATTCTTGTCTAATACAGGCTTCTAGTTGCTCAACTGTCTTAGGTCTTCTTTGTCGCATCTTCCTCTTTATGATGCGCCAAATGTTTTCTATGGGTGAAAGATCTGGACTGCTGGCTGGCCATTTCAGTACCCGGATCCTTCTTCTACGCAGCCATGATGTTGTAATTGATGCAGTATGTGGTCTGGCATTGTCATGTTGGAAAATGCAAGGTCTTCCCTGAAAGAGACGACATCTGGATGGGAGCATATGTTGTTCTAGAACTTGGATATACCTTTCAGCATTGATGGTGCCTTTCCAGATGTGTAAGCTGCCCATGCCACACGCACTCATGCAATCCCATACCATCAGAGATGCAGGCTTCTGAACTGAGCGCTGATAACAACTTGGGTTGTCCTTGTCCTCTTTAGTCCGGATGACATGGCGTCCCAGTTTTCCAAAAAGAACTTCAAATTTTGATTTGTCTGACCACAGAACAGTTTTCCACTTCGCCACAGTCCATTTTAAATGAGCCTTGGCCCAGAGAAAACGCCTGCGCTTCTGGATCATTTTTATACCCAAAAATGATCTTTTTATACCCAATCATGTTGCCAATTGACCTAATAAGTTGCAAATTGGTCCTCCAGCTGTTCCTTATATGTACATTTAACTTTGCTGGCCTCTTATTGCTACCTGTCCCAACTTTTTTGGAATGTGTAGCTCCAAAATGAGCCAATATTTGGCATGACATTTCAAAATGTTTCACTTTCAACATTTGATATGTTATCTATATTCTATTGTGAATAAAATATGAGTTTATGAGACTTGTAAATTATTGCATTCCTTGTTTATTCACAATTTGTACAGTGTCCCAACTTTTTTGGAATCGGGTTTGTAATTTTTAAATGTCACAAAACTTGGAGCAGCTTTAACAAATGTGTTTTTTCTTTCCTCTGCTCATCTGTACGTCACATTTTTAAAGCTGTATCAAGTTAAAATAAGTGATTTTAAAATATTGCTGTGTTGCATCTTGCATTCTTAAATGTAAGAACACAGTCTGTTTGAAGCTTTAAGACAATTATTTCATTCCTGCAGACATCATGTGAAGAGATATTTTCCTCTTTTCACCCTCTGCAC
>TU90637
CTCTTCTTTTTATAACAGTCTGCAAACGTCTGGGGACTGAGGAGACAAGTTGCTCAAGTTTAGGAATAGGAATGTTGTCCCATTCTTGTCTAATACAGGCTTCTAGTTGCTCAACTGTCTTAGGTCTTCTTTGTCGCATCTTCCTCTTTATGATGCGCCAAATGTTTTCTATGGGTGAAAGATCTGGACTGCTGGCTGGCCATTTCAGTACCCGGATCCTTCTTCTACGCAGCCATGATGTTGTAATTGATGCAGTATGTGGTCTGGCATTGTCATGTTGGAAAATGCAAGGTCTTCCCTGAAAGAGACGACATCTGGATGGGAGCATATGTTGTTCTAGAACTTGGATATACCTTTCAGCATTGATGGTGCCTTTCCAGATGTGTAAGCTGCCCATGCCACACGCACTCATGCAATCCCATACCATCAGAGATGCAGGCTTCTGAACTGAGCGCTGATAACAACTTGGGTTGTCCTTGTCCTCTTTAGTCCGGATGACATGGCGTCCCAGTTTTCCAAAAAGAACTTCAAATTTTGATTTGTCTGACCACAGAACAGTTTTCCACTTCGCCACAGTCCATTTTAAATGAGCCTTGGCCCAGAGAAAACGCCTGCGCTTCTGGATCATTTTTATACCCAAAAATGATCTTTTTATACCCAATCATGTTGCCAATTGACCTAATAAGTTGCAAATTGGTCCTCCAGCTGTTCCTTATATGTACATTTAACTTTGCTGGCCTCTTATTGCTACCTGTCCCAACTTTTTTGGAATGTGTAGCTCCAAAATGAGCCAATATTTGGCATGACATTTCAAAATGTTTCACTTTCAACATTTGATATGTTATCTATATTCTATTGTGAATAAAATATGAGTTTATGAGACTTGTAAATTATTGCATTCCTTGTTTATTCACAATTTGTACAGTGTCCCAACTTTTTTGGAATCGGGTTTGTAATTTTTAAATGTCACAAAACTTGGAGCAGCTTTAACAAATGTGTTTTTTCTTTCCTCTGCTCATCTGTACGTCACATTTTTAAAGCTGTATCAAGTTAAAATAAGTGATTTTAAAATATTGCTGTGTTGCATCTTGCATTCTTAAATGTAAGAACACAGTCTGTTTGAAGCTTTAAGACAATTATTTCATTCCTGCAGACATCATGTGAAGAGATATTTTCCTCTTTTCACCCTCTGCAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU90636 False 1195 lncRNA 0.39 2 2987377 2988901
TU90637 True 1195 lncRNA 0.39 2 2987377 2988901

Neighbor

gene id symbol gene type direction distance location
CI01000013_02859975_02863496 TMEM170A coding upstream 123431 2859975 ~ 2863946 (+)
CI01000013_02815238_02816664 NA coding upstream 170054 2815180 ~ 2817323 (+)
CI01000013_02709871_02711692 NA coding upstream 274878 2709453 ~ 2712499 (+)
CI01000013_02692887_02696848 NA coding upstream 290357 2692443 ~ 2697020 (+)
CI01000013_02685665_02686639 NA coding upstream 300542 2682467 ~ 2686835 (+)
CI01000013_03019688_03044233 TSNAXIP1, PARD6A coding downstream 30787 3019688 ~ 3044374 (+)
CI01000013_03087239_03094115 TSNAXIP1 coding downstream 98338 3087239 ~ 3094458 (+)
CI01000013_03121085_03147061 EDC4 coding downstream 132184 3121085 ~ 3147622 (+)
CI01000013_03186643_03190449 NRN1LA coding downstream 197742 3186643 ~ 3190677 (+)
CI01000013_03225714_03236717 FAN1 coding downstream 236813 3225714 ~ 3237045 (+)
G79548 NA non-coding upstream 97811 2888539 ~ 2889566 (+)
G79546 NA non-coding upstream 101878 2885269 ~ 2885499 (+)
G79495 NA non-coding upstream 103479 2883529 ~ 2883898 (+)
G79545 NA non-coding upstream 105352 2881766 ~ 2882025 (+)
G79544 NA non-coding upstream 105648 2881481 ~ 2881729 (+)
G79593 NA non-coding downstream 7651 2996552 ~ 2997395 (+)
G79596 NA non-coding downstream 17080 3005981 ~ 3006270 (+)
G79598 NA non-coding downstream 22761 3011662 ~ 3012068 (+)
G79600 NA non-coding downstream 24310 3013211 ~ 3013753 (+)
G79601 NA non-coding downstream 58335 3047236 ~ 3047532 (+)
G79309 NA other upstream 520206 2466765 ~ 2467171 (+)
G77695 NA other upstream 2034408 946521 ~ 952969 (+)
G77533 NA other upstream 2277828 708833 ~ 709549 (+)
G80062 NA other downstream 595107 3584008 ~ 3584784 (+)
CI01000013_04051081_04064651 NA other downstream 1076032 4050837 ~ 4065829 (+)
G80845 NA other downstream 1846177 4835078 ~ 4836232 (+)
CI01000013_06050285_06059640 NA other downstream 3067397 6049864 ~ 6060269 (+)
CI01000013_06076169_06080164 NA other downstream 3089661 6075400 ~ 6081684 (+)

Expression


Co-expression Network