Gene
RNA
| Item | Value |
|---|---|
| gene id | G80037 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000013 |
| NCBI id | null |
| chromosome length | 12551977 |
| location | 3708957 ~ 3712091 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU91129 | True | 3135 | lncRNA | 0.36 | 1 | 3708957 | 3712091 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000013_03617490_03705093 | IGF1R, IGF1RA | coding | upstream | 3864 | 3617490 ~ 3705093 (+) |
| CI01000013_03570185_03581155 | NA | coding | upstream | 127228 | 3570089 ~ 3581729 (+) |
| CI01000013_03565240_03566364 | NA | coding | upstream | 142406 | 3565136 ~ 3566551 (+) |
| CI01000013_03505522_03510594 | NA | coding | upstream | 198240 | 3505522 ~ 3510717 (+) |
| CI01000013_03501267_03503856 | NA | coding | upstream | 204569 | 3501267 ~ 3504388 (+) |
| CI01000013_03715150_03721616 | SYNM | coding | downstream | 3059 | 3715150 ~ 3721731 (+) |
| CI01000013_03744519_03787129 | CTTNBP2 | coding | downstream | 32428 | 3744519 ~ 3788177 (+) |
| CI01000013_03823326_03839656 | ASZ1 | coding | downstream | 111235 | 3823326 ~ 3839910 (+) |
| CI01000013_03843207_03852634 | WNT2 | coding | downstream | 131116 | 3843207 ~ 3854025 (+) |
| CI01000013_03856173_03872356 | BCL2L13 | coding | downstream | 144082 | 3856173 ~ 3872947 (+) |
| G80040 | NA | non-coding | upstream | 729 | 3706723 ~ 3708228 (+) |
| G80041 | NA | non-coding | upstream | 56382 | 3602363 ~ 3652575 (+) |
| G80058 | NA | non-coding | upstream | 178110 | 3530435 ~ 3530847 (+) |
| G80003 | NA | non-coding | upstream | 296952 | 3411495 ~ 3412005 (+) |
| G79994 | NA | non-coding | upstream | 318631 | 3389945 ~ 3390326 (+) |
| G80068 | NA | non-coding | downstream | 885 | 3712976 ~ 3713187 (+) |
| G80069 | NA | non-coding | downstream | 1206 | 3713297 ~ 3713517 (+) |
| G80072 | NA | non-coding | downstream | 20052 | 3732143 ~ 3740009 (+) |
| G80075 | NA | non-coding | downstream | 28185 | 3740276 ~ 3740559 (+) |
| G80081 | NA | non-coding | downstream | 80576 | 3792667 ~ 3792881 (+) |
| G80062 | NA | other | upstream | 124173 | 3584008 ~ 3584784 (+) |
| G79309 | NA | other | upstream | 1241786 | 2466765 ~ 2467171 (+) |
| G77695 | NA | other | upstream | 2755988 | 946521 ~ 952969 (+) |
| G77533 | NA | other | upstream | 2999408 | 708833 ~ 709549 (+) |
| CI01000013_04051081_04064651 | NA | other | downstream | 352842 | 4050837 ~ 4065829 (+) |
| G80845 | NA | other | downstream | 1122987 | 4835078 ~ 4836232 (+) |
| CI01000013_06050285_06059640 | NA | other | downstream | 2344207 | 6049864 ~ 6060269 (+) |
| CI01000013_06076169_06080164 | NA | other | downstream | 2366471 | 6075400 ~ 6081684 (+) |
| G81994 | NA | other | downstream | 3623854 | 7335945 ~ 7338239 (+) |
| species | gene id | symbol | gene type | chromosome | NCBI id | location |
|---|---|---|---|---|---|---|
| zebrafish (Danio rerio) | XLOC_012780 | pgpep1l | coding | NC_007129.7 | CM002902.2 | 20869923 ~ 20875997 (+) |
| striped catfish (Pangasianodon hypophthalmus) | G99453 | NA | non-coding | NC_047600.1 | CM018546.1 | 14533820 ~ 14536010 (-) |
