G80088


Basic Information

Item Value
gene id G80088
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000013
NCBI id null
chromosome length 12551977
location 3806054 ~ 3806715 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU91184
ATACGTGCTGTCCGACAGGCGGCGAGTGTAGATGTCCAGCTCAGAAGCCAGTTCGCTCTGAGGCACGACGGACAGCCGTCTACGGAAAGAGGACTGAAGGTGGTCACGACGGCCCTGGCCTTGTGCATTGGTCATGAAGGCTAACACTGACTGCCTTCTCTGACCAGCCATATGCACCCCGTGGTTATGATACACGTCGCTTCCCATGAAGGATTCGTCTACTAGCTCGTTCTCGGGTACCAGGGAAAACTTCCGCTCAGGTAATGTCCTCCGGACCTCTTCCTCTGGTACCTGAATGAAAGATGCCTTACGAGCTGCTCCAAGAGGGTTGACGATCACTGAAGCTTTTCTCTCATCTATGTACTTGGGCATGGGCGGGGCCACCTGGCGATAAGAAGAGCGTTCAGGTCGCATGCCTGCGCTCTCATCCACCGAGACGCGGTGGAGAGTCTCTGTGAGGATAGAGCAGCGGCGCTCTGCGCTGATATTGTCATAGGCCTCCAAACCCAGAAGCAAAGAGCTAAAATCAGGACGCTCTGATTGAAGCTCTGAAAATGTGCCGTAGAAAAAACTTTCACCATTGTGGAGCAGTATGATCTTATCTGCCCGCTTCAAATGCTCAATCTTATTTGTTACCAAGATGCGTGTCTTGGAGGCCATCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU91184 True 662 lncRNA 0.53 1 3806054 3806715

Neighbor

gene id symbol gene type direction distance location
CI01000013_03744519_03787129 CTTNBP2 coding upstream 17877 3744519 ~ 3788177 (+)
CI01000013_03715150_03721616 SYNM coding upstream 84323 3715150 ~ 3721731 (+)
CI01000013_03617490_03705093 IGF1R, IGF1RA coding upstream 100961 3617490 ~ 3705093 (+)
CI01000013_03570185_03581155 NA coding upstream 224325 3570089 ~ 3581729 (+)
CI01000013_03565240_03566364 NA coding upstream 239503 3565136 ~ 3566551 (+)
CI01000013_03823326_03839656 ASZ1 coding downstream 16611 3823326 ~ 3839910 (+)
CI01000013_03843207_03852634 WNT2 coding downstream 36492 3843207 ~ 3854025 (+)
CI01000013_03856173_03872356 BCL2L13 coding downstream 49458 3856173 ~ 3872947 (+)
CI01000013_03885988_03895027 KIAA1147 coding downstream 79273 3885988 ~ 3895027 (+)
CI01000013_03902606_03908849 IGHMBP2 coding downstream 95891 3902606 ~ 3909058 (+)
G80087 NA non-coding upstream 584 3805215 ~ 3805470 (+)
G80083 NA non-coding upstream 12654 3793004 ~ 3793400 (+)
G80081 NA non-coding upstream 13173 3792667 ~ 3792881 (+)
G80075 NA non-coding upstream 65495 3740276 ~ 3740559 (+)
G80072 NA non-coding upstream 66045 3732143 ~ 3740009 (+)
G80143 NA non-coding downstream 120455 3927170 ~ 3927724 (+)
G80144 NA non-coding downstream 121607 3928322 ~ 3928550 (+)
G80105 NA non-coding downstream 140089 3946804 ~ 3948697 (+)
CI01000013_03952621_03964132 KIF23 non-coding downstream 156533 3952621 ~ 3964234 (+)
G80153 NA non-coding downstream 203600 4010315 ~ 4010552 (+)
G80062 NA other upstream 221270 3584008 ~ 3584784 (+)
G79309 NA other upstream 1338883 2466765 ~ 2467171 (+)
G77695 NA other upstream 2853085 946521 ~ 952969 (+)
G77533 NA other upstream 3096505 708833 ~ 709549 (+)
CI01000013_04051081_04064651 NA other downstream 258218 4050837 ~ 4065829 (+)
G80845 NA other downstream 1028363 4835078 ~ 4836232 (+)
CI01000013_06050285_06059640 NA other downstream 2249583 6049864 ~ 6060269 (+)
CI01000013_06076169_06080164 NA other downstream 2271847 6075400 ~ 6081684 (+)
G81994 NA other downstream 3529230 7335945 ~ 7338239 (+)

Expression


Co-expression Network