G80828


Basic Information

Item Value
gene id G80828
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000013
NCBI id null
chromosome length 12551977
location 4563237 ~ 4564657 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU92006
ATATTGTACCTATAAAATCAAAGGCAGTGTATAGATACTGAAAGGATATTGAACTATATATATATATAGTCTCTTTTGCTCACCAAGGCTGCATTATTTGATACAAAAAATACAGTAAAAACAGTAATATTGTGAAATATTATTCCAATTTAAAATAATTGTTTTCTATTTTAATATATTTTACAATTTAATTTATTCCTGTGATGGCAAAGCTGAATTTTCAGTATCATTAATCCAGTCTTAAGTGTCACATGATCCTTCAGAAATCATTCTAATATGCTGATTTAATGCTCAAGAAACATTTCTTATTATTATCAATGTTAAAAACAGTTGGGCTGCTTAATATTTGGTATCATGGAAACCATGATACATTTTTTTTTCTCAGGATTCTTTGATGAATAGAAAGTAAAAAGAACAGGGTAATTCTGTGTCAACTCAACCAGAGGTACCCAGCTCAAATTTTTGATTTTGTTAATATTTTTTCTGTAGAAAGACAAACATAAATAGTGACGAAACCCAAGATATTAAATGTCACAGATGTGTATTTACTGAATAATCCACTATTTTGTAGAGGGGGTCAAAATGACAATTTTCACCTGAGATTTGGAGCCAAATTAGAGGGGTGTAAAAATGACTTTAGAAAGATGGTAGCATCATTATTTTATTTTTAGATTGGTAGGCCTGTTAGTAAAATCTGTTGACTTTAGCAATCTTGGATTCATTATATGCCAACAGTGACAGTTCAAAAATGGAAAAAAGCACTTCTTGTGTTTTTTTGCCTCAAGTTTGCATACCTGTAAATCAGGAAAGGGCTTTTCACACTTGAAATAGTTAACCCTGGGTCATTTTAAGCCCCTGGTAAACGAAATCCTCCCTTACAAAAAAAGAACTGCAGTATATTGAAGTACAACTGCCGTAAAACTACAGTACAAAGTAGTATAACTGCATTATAATTAAGCACAACCATAGATTTGCAGTATAATGAAGTATAATCACAGTACAACTGCAGTACATTGAAGTTCAACAGCAGTAAAACTGCAGTTGTATTGCAGCTATACTGCAATATTTCTGTTTTTTCGTGTCCAAAAAACTGCAGTTTTCTATATGTAAAAACTGCAATGATCTTTTGTAAGGGCTGGGTTATCTTTATTCACGTTTCACACTGCTAATAGTATACCCAGGGTTAACAGTTAATCCTGGGTATTCATAAACTGACGTTTCACACTGCACATTCCTAAACCCAGGGATAAAGTGCTTATCTGCATATTTGCGGTGCCAGTGTCACTGACTAGACAAACGCAGCACGTGACCTGTTTACATTAAAGGGATAGTTCACCCAAAAATGAAAATGATTTACTCACCCTCAAGTTGTTCCAAACCTGTAAAAATGTCTTTGTTCTGTTGAACACAAAGGAAAATAN

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU92006 True 1421 lncRNA 0.33 1 4563237 4564657

Neighbor

gene id symbol gene type direction distance location
CI01000013_04542059_04550082 LCTLB, LCTL coding upstream 12930 4542059 ~ 4550307 (+)
CI01000013_04505188_04527744 NA coding upstream 35365 4505145 ~ 4527872 (+)
CI01000013_04425884_04426805 NA coding upstream 136227 4425748 ~ 4427010 (+)
CI01000013_04344339_04347938 AAGAB coding upstream 215154 4344339 ~ 4348083 (+)
CI01000013_04316134_04317091 NA coding upstream 246039 4316134 ~ 4317198 (+)
CI01000013_04612468_04618550 NA coding downstream 47397 4612054 ~ 4619000 (+)
CI01000013_04657029_04672057 MEGF11 coding downstream 92146 4656803 ~ 4672742 (+)
CI01000013_04673313_04707104 MEGF11 coding downstream 108559 4673216 ~ 4707470 (+)
CI01000013_04720501_04724747 NA coding downstream 155844 4720501 ~ 4724940 (+)
CI01000013_04750261_04754885 NA coding downstream 185604 4750261 ~ 4756045 (+)
G80818 NA non-coding upstream 32622 4530368 ~ 4530615 (+)
G80817 NA non-coding upstream 37588 4525377 ~ 4525649 (+)
G80815 NA non-coding upstream 40586 4522418 ~ 4522651 (+)
G80814 NA non-coding upstream 41791 4521208 ~ 4521446 (+)
G80812 NA non-coding upstream 45869 4517155 ~ 4517368 (+)
G80827 NA non-coding downstream 508 4565165 ~ 4565347 (+)
G80829 NA non-coding downstream 2101 4566758 ~ 4567003 (+)
G80830 NA non-coding downstream 6541 4571198 ~ 4571553 (+)
G80831 NA non-coding downstream 7107 4571764 ~ 4572100 (+)
G80832 NA non-coding downstream 8145 4572802 ~ 4573332 (+)
CI01000013_04051081_04064651 NA other upstream 497408 4050837 ~ 4065829 (+)
G80062 NA other upstream 978453 3584008 ~ 3584784 (+)
G79309 NA other upstream 2096066 2466765 ~ 2467171 (+)
G77695 NA other upstream 3610268 946521 ~ 952969 (+)
G77533 NA other upstream 3853688 708833 ~ 709549 (+)
G80845 NA other downstream 270421 4835078 ~ 4836232 (+)
CI01000013_06050285_06059640 NA other downstream 1491641 6049864 ~ 6060269 (+)
CI01000013_06076169_06080164 NA other downstream 1513905 6075400 ~ 6081684 (+)
G81994 NA other downstream 2771288 7335945 ~ 7338239 (+)
G82168 NA other downstream 3463681 8028338 ~ 8041343 (+)

Expression


Co-expression Network