G80832


Basic Information

Item Value
gene id G80832
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000013
NCBI id null
chromosome length 12551977
location 4572802 ~ 4573332 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU92010
TGACAACGCAGCATGCTGTGCTACAACCACTTGTTATAAAGTAATAAATAATTCAGTACTACTACGCAGTCAATTATTTAGTCTACCCTTTGATACACGTTTACATAAAAATGGCAGATTCTTTCTGAGAAAAGACAAAAATTGCATAAAAATGAAGAGTAAAAGCTACTCATGGTTTGAGATTCAAACACAGAAAAGCCTCTGAAGGCCCAAGAAGAGTACTTGAAAGAATCATAACTTCACTTCCATTTCCCATTTTTTCCCAAGCGTTTTTGAAGATGTGTGTGGATACAGTATGATCAAACACAGGAAATAAGTGGTCTGCTTCACATGTCGTGCCTTGGAATGTGAATGTAAACACTAGGGTGCACCGGGATCAGCTGAGGAAGCAAATCATTTTTCTCTGGGGAGGTGCGCAATACCAGAGACTGTGCTCTGTGGTCAATATTTAACTATACACTCCATAAATCATTCCTGTGGATACATTTGTGTTGTCATCCTGTAAAGCAGCAATTTAAACTCAGACATAAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU92010 True 531 lncRNA 0.38 1 4572802 4573332

Neighbor

gene id symbol gene type direction distance location
CI01000013_04542059_04550082 LCTLB, LCTL coding upstream 22495 4542059 ~ 4550307 (+)
CI01000013_04505188_04527744 NA coding upstream 44930 4505145 ~ 4527872 (+)
CI01000013_04425884_04426805 NA coding upstream 145792 4425748 ~ 4427010 (+)
CI01000013_04344339_04347938 AAGAB coding upstream 224719 4344339 ~ 4348083 (+)
CI01000013_04316134_04317091 NA coding upstream 255604 4316134 ~ 4317198 (+)
CI01000013_04612468_04618550 NA coding downstream 38722 4612054 ~ 4619000 (+)
CI01000013_04657029_04672057 MEGF11 coding downstream 83471 4656803 ~ 4672742 (+)
CI01000013_04673313_04707104 MEGF11 coding downstream 99884 4673216 ~ 4707470 (+)
CI01000013_04720501_04724747 NA coding downstream 147169 4720501 ~ 4724940 (+)
CI01000013_04750261_04754885 NA coding downstream 176929 4750261 ~ 4756045 (+)
G80831 NA non-coding upstream 702 4571764 ~ 4572100 (+)
G80830 NA non-coding upstream 1249 4571198 ~ 4571553 (+)
G80829 NA non-coding upstream 5799 4566758 ~ 4567003 (+)
G80827 NA non-coding upstream 7455 4565165 ~ 4565347 (+)
G80828 NA non-coding upstream 8145 4563237 ~ 4564657 (+)
G80826 NA non-coding downstream 4199 4577531 ~ 4577913 (+)
G80834 NA non-coding downstream 136475 4709807 ~ 4712529 (+)
G80875 NA non-coding downstream 144751 4718083 ~ 4718297 (+)
G80879 NA non-coding downstream 196978 4770310 ~ 4770538 (+)
G80842 NA non-coding downstream 243138 4816470 ~ 4818947 (+)
CI01000013_04051081_04064651 NA other upstream 506973 4050837 ~ 4065829 (+)
G80062 NA other upstream 988018 3584008 ~ 3584784 (+)
G79309 NA other upstream 2105631 2466765 ~ 2467171 (+)
G77695 NA other upstream 3619833 946521 ~ 952969 (+)
G77533 NA other upstream 3863253 708833 ~ 709549 (+)
G80845 NA other downstream 261746 4835078 ~ 4836232 (+)
CI01000013_06050285_06059640 NA other downstream 1482966 6049864 ~ 6060269 (+)
CI01000013_06076169_06080164 NA other downstream 1505230 6075400 ~ 6081684 (+)
G81994 NA other downstream 2762613 7335945 ~ 7338239 (+)
G82168 NA other downstream 3455006 8028338 ~ 8041343 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
tiger barb (Puntius tetrazona) G124503 NA non-coding NC_056716.1 CM032085.1 4752363 ~ 4752569 (+)