Gene
RNA
| Item | Value |
|---|---|
| gene id | G80834 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000013 |
| NCBI id | null |
| chromosome length | 12551977 |
| location | 4709807 ~ 4712529 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU92013 | True | 2578 | lncRNA | 0.43 | 2 | 4709807 | 4712529 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000013_04673313_04707104 | MEGF11 | coding | upstream | 2337 | 4673216 ~ 4707470 (+) |
| CI01000013_04657029_04672057 | MEGF11 | coding | upstream | 37065 | 4656803 ~ 4672742 (+) |
| CI01000013_04612468_04618550 | NA | coding | upstream | 90807 | 4612054 ~ 4619000 (+) |
| CI01000013_04542059_04550082 | LCTLB, LCTL | coding | upstream | 159500 | 4542059 ~ 4550307 (+) |
| CI01000013_04505188_04527744 | NA | coding | upstream | 181935 | 4505145 ~ 4527872 (+) |
| CI01000013_04720501_04724747 | NA | coding | downstream | 7972 | 4720501 ~ 4724940 (+) |
| CI01000013_04750261_04754885 | NA | coding | downstream | 37732 | 4750261 ~ 4756045 (+) |
| CI01000013_04760068_04760352 | NA | coding | downstream | 47478 | 4760007 ~ 4760374 (+) |
| CI01000013_04774039_04780331 | VWA9 | coding | downstream | 61510 | 4774039 ~ 4780762 (+) |
| CI01000013_04788303_04790895 | PPCDC | coding | downstream | 75774 | 4788303 ~ 4791025 (+) |
| G80826 | NA | non-coding | upstream | 131894 | 4577531 ~ 4577913 (+) |
| G80832 | NA | non-coding | upstream | 136475 | 4572802 ~ 4573332 (+) |
| G80831 | NA | non-coding | upstream | 137707 | 4571764 ~ 4572100 (+) |
| G80830 | NA | non-coding | upstream | 138254 | 4571198 ~ 4571553 (+) |
| G80829 | NA | non-coding | upstream | 142804 | 4566758 ~ 4567003 (+) |
| G80875 | NA | non-coding | downstream | 5554 | 4718083 ~ 4718297 (+) |
| G80879 | NA | non-coding | downstream | 57781 | 4770310 ~ 4770538 (+) |
| G80842 | NA | non-coding | downstream | 103941 | 4816470 ~ 4818947 (+) |
| G80850 | NA | non-coding | downstream | 113789 | 4826318 ~ 4828164 (+) |
| G80893 | NA | non-coding | downstream | 136910 | 4849439 ~ 4849797 (+) |
| CI01000013_04051081_04064651 | NA | other | upstream | 643978 | 4050837 ~ 4065829 (+) |
| G80062 | NA | other | upstream | 1125023 | 3584008 ~ 3584784 (+) |
| G79309 | NA | other | upstream | 2242636 | 2466765 ~ 2467171 (+) |
| G77695 | NA | other | upstream | 3756838 | 946521 ~ 952969 (+) |
| G77533 | NA | other | upstream | 4000258 | 708833 ~ 709549 (+) |
| G80845 | NA | other | downstream | 122549 | 4835078 ~ 4836232 (+) |
| CI01000013_06050285_06059640 | NA | other | downstream | 1343769 | 6049864 ~ 6060269 (+) |
| CI01000013_06076169_06080164 | NA | other | downstream | 1366033 | 6075400 ~ 6081684 (+) |
| G81994 | NA | other | downstream | 2623416 | 7335945 ~ 7338239 (+) |
| G82168 | NA | other | downstream | 3315809 | 8028338 ~ 8041343 (+) |
