G80850


Basic Information

Item Value
gene id G80850
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000013
NCBI id null
chromosome length 12551977
location 4826318 ~ 4828164 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU92032
CAAAAGGTACGTATTTTGTGAAGTCTTTAAAACTTTAAACAACCAATACAAATAAAAAAAATCATCACAATAAATTCGATATTCATAAAAAAAAATATATATATATATATCTGAACCTACCAAGCAGAGCCATGTGGCTCCCAGGGCCCCAGGCAAACCCAGCAGAATTCTGCTTTGCAGTTCTGGTTCCGGCACACCATGTGGTTGCAGCCACCATCTTTCTCTATGGTGACATGGCATTTCGGACATTCCTTGTATTTGCTGCAATCCAGTTTGATGTCTCACTGTCATCGTCACATTTTTTAATCCATTTCCTTAACCACTGGGATCGAGAGGCAAAATAACAGAGGACATACAAGAATCAATTCACTGTAACAAATAGGACAACTAAAAAGTGAGGCATTAATAGATATTACATAAAAACATGTACAAGAGCAGGGAGTTATGAAGGGTTAAATGTTCTCTCTCAATGGAAGATGATTGTAATCCCCATATGAGAAGCACAAGGGACTAGAATATTCCTTTGTTTTTGCCAAGACTACCCCCACAATAACAAGTCTCTGAAGAGCCTCTTAATGCTGAGAGTAGGAGAGGTGGCAGTCTGCTAGCTTTCTTTGTTCTGAAAAACTTGCCATAATCAACATTTTCCCTGCTTTCTACACTGTAAATGTGCATTAATTTTTTTCAGTGCTGTCCTTTCAGAATGGATGTCTATTAAAGGTATTGTAGGTAATGTTTTTCATAAACATTTTTTGTTATACTGGTCGAAACTCTCTTCACATCCTGATAGCAATCAATAATAAAAGTGGTCTAAATATAAAAAAAAAAAAAAAAAGTACATATACTGTATCTTCTGTAGAAGTCTAAGGACCAAAATGTTTGTCCAATTATTGCATTCAGCTCAAACGCAATAAAAGGATGTACTACCTGCCTGTCAACCTATGTATTTCCATACCTCCCTCTGCGCACAATGCTCGCGCAGACATCACACGTCATCAGCACGTTCCATGAGGCTATGCAGAGCTGTACACAGACAGTCACCGAGAGCCACAAACAAACAGCAGCCACCTTTTACAGTTCCTCCTGAACCAAAACAACGAGCTTGTGCTGCGTTCACACCATAACTACCATAATTAACAAGAGATGGCAACCCGTGATGTTCTACTCTGAGCGATTTGATTTATGCATTTCTATGGCAACACTAACAATGCCGAAATTAATCTGCAGCAGCAGTTTATTGTTGTTTATGTTCATTATTATTGTAGTGTTTTGTGGCATGAGGTAATTTAACACCATCGCTCGTGACGATTTGCACTCTGCTCTGCTGTGTGTGTTCATGTGCTTTGGAGGAGGCGTGGCTTTGGAGAGCGCTCTGAAGAGAGGGTCTGGGATCTTATGATTTCAAAGCTAGCTTGCTATTGCTAGCCACTCTGAAATTGCCTACCCTACCTTTAATGGAAATGGAATTGTGCATTCTACTTTTGAAAAAAAATGTCTACTCATTTTGCCTCAGTTATTTAGACAAAGTGGGAGTTTTGCACACACACGCTTTTGGAATTCACACCGATGTAAAAAATAAATAAATTAGTGTATTTATAGAAAAGTATGATCCAGGTTTTTCAGCCAGAAATAAGACCAACTGTGCTAAACTATAAAAAACACGGAAGCCATTGTTGACAATAAAAAAAGCTTTAAAAAATGCACAAGACACAAAACCATGACTCAATATATTTATATATAAACACTGATAGCATTGTTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU92032 True 1759 lncRNA 0.38 2 4826318 4828164

Neighbor

gene id symbol gene type direction distance location
CI01000013_04805165_04810980 NA coding upstream 15338 4804479 ~ 4810980 (+)
CI01000013_04788303_04790895 PPCDC coding upstream 35293 4788303 ~ 4791025 (+)
CI01000013_04774039_04780331 VWA9 coding upstream 45556 4774039 ~ 4780762 (+)
CI01000013_04760068_04760352 NA coding upstream 65944 4760007 ~ 4760374 (+)
CI01000013_04750261_04754885 NA coding upstream 70273 4750261 ~ 4756045 (+)
CI01000013_04837614_04840771 NA coding downstream 9450 4837614 ~ 4841571 (+)
CI01000013_04854576_04864881 NA coding downstream 26412 4854576 ~ 4865227 (+)
CI01000013_04869003_04877964 AARS coding downstream 40801 4868965 ~ 4878377 (+)
CI01000013_04916607_04940299 SF3B3, SF3B3.L coding downstream 88149 4916313 ~ 4940308 (+)
CI01000013_04943413_04948991 IL34 coding downstream 115249 4943413 ~ 4949256 (+)
G80842 NA non-coding upstream 7371 4816470 ~ 4818947 (+)
G80879 NA non-coding upstream 55780 4770310 ~ 4770538 (+)
G80875 NA non-coding upstream 108021 4718083 ~ 4718297 (+)
G80834 NA non-coding upstream 113789 4709807 ~ 4712529 (+)
G80826 NA non-coding upstream 248405 4577531 ~ 4577913 (+)
G80893 NA non-coding downstream 21275 4849439 ~ 4849797 (+)
G80919 NA non-coding downstream 90819 4918983 ~ 4919289 (+)
G80798 NA non-coding downstream 149085 4977249 ~ 4977687 (+)
G80795 NA non-coding downstream 149816 4977980 ~ 4978800 (+)
G80933 NA non-coding downstream 176210 5004374 ~ 5004897 (+)
CI01000013_04051081_04064651 NA other upstream 760489 4050837 ~ 4065829 (+)
G80062 NA other upstream 1241534 3584008 ~ 3584784 (+)
G79309 NA other upstream 2359147 2466765 ~ 2467171 (+)
G77695 NA other upstream 3873349 946521 ~ 952969 (+)
G77533 NA other upstream 4116769 708833 ~ 709549 (+)
G80845 NA other downstream 6914 4835078 ~ 4836232 (+)
CI01000013_06050285_06059640 NA other downstream 1228134 6049864 ~ 6060269 (+)
CI01000013_06076169_06080164 NA other downstream 1250398 6075400 ~ 6081684 (+)
G81994 NA other downstream 2507781 7335945 ~ 7338239 (+)
G82168 NA other downstream 3200174 8028338 ~ 8041343 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
tiger barb (Puntius tetrazona) G129427 NA non-coding NC_056716.1 CM032085.1 26160025 ~ 26160419 (+)