G80933


Basic Information

Item Value
gene id G80933
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000013
NCBI id null
chromosome length 12551977
location 5004374 ~ 5004897 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU92116
CACATGAGCCAATATTTTATTCACAATAGAACATAGATAACATAACAAATGTTTAAATGGAGAAATTTTACACTTTTATCCACTAAATGAGCTCATTTCAAATTTGATGCCTGCTACAGGTCTCAAAATAGTTGGCACGGGGGCAACAAATGGCTGAAAAAGCAAGAAATTTTGAAAAGATTCAGCTGGGAGAACATTTAGCAACTAATTAAGTTAATTGATATCAGGTCTGTAACATGATTAGCTATAAAAGGGATGTCTTAGAGAGGCAGAGTCTCTCCAATCTGAAAAAAGATTGTGGAATACTTTAAAAACAATGTTCCTCAACGTCAAATTGCAAAGGCTTTGCAAATCTCATCATTTACAGTGCATAACACCATCAAAAGATTCAGAGAAACTGGAGAAATCTCTGTGCATAAGGGAAAAGACTGAAGACCTTTATTGGATGCCCGTGGTCTTCGGCCCTCAGATGACACTGCATCACTCATGGGCATGATTGTGTCAATGACATTACTAAATGGACC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU92116 True 524 lncRNA 0.37 1 5004374 5004897

Neighbor

gene id symbol gene type direction distance location
CI01000013_04989803_04992613 NA coding upstream 11486 4989534 ~ 4992888 (+)
CI01000013_04950930_04976334 LONP2 coding upstream 27664 4950930 ~ 4976710 (+)
CI01000013_04943413_04948991 IL34 coding upstream 55118 4943413 ~ 4949256 (+)
CI01000013_04916607_04940299 SF3B3, SF3B3.L coding upstream 64066 4916313 ~ 4940308 (+)
CI01000013_04869003_04877964 AARS coding upstream 125997 4868965 ~ 4878377 (+)
CI01000013_05246618_05251189 NA coding downstream 239897 5244794 ~ 5251310 (+)
CI01000013_05262407_05267780 NA coding downstream 257232 5262129 ~ 5267965 (+)
CI01000013_05402289_05403494 NA coding downstream 396690 5401587 ~ 5403927 (+)
CI01000013_05436977_05445492 NA coding downstream 432080 5436977 ~ 5445492 (+)
CI01000013_05572116_05579830 BBS2 coding downstream 566443 5571340 ~ 5580139 (+)
G80795 NA non-coding upstream 25574 4977980 ~ 4978800 (+)
G80798 NA non-coding upstream 26687 4977249 ~ 4977687 (+)
G80919 NA non-coding upstream 85085 4918983 ~ 4919289 (+)
G80893 NA non-coding upstream 154577 4849439 ~ 4849797 (+)
G80850 NA non-coding upstream 176210 4826318 ~ 4828164 (+)
G80942 NA non-coding downstream 23229 5028126 ~ 5028475 (+)
G80946 NA non-coding downstream 32687 5037584 ~ 5037832 (+)
G81152 NA non-coding downstream 105940 5110837 ~ 5111052 (+)
G81160 NA non-coding downstream 139488 5144385 ~ 5144584 (+)
G81172 NA non-coding downstream 168624 5173521 ~ 5173804 (+)
G80845 NA other upstream 168142 4835078 ~ 4836232 (+)
CI01000013_04051081_04064651 NA other upstream 938545 4050837 ~ 4065829 (+)
G80062 NA other upstream 1419590 3584008 ~ 3584784 (+)
G79309 NA other upstream 2537203 2466765 ~ 2467171 (+)
G77695 NA other upstream 4051405 946521 ~ 952969 (+)
CI01000013_06050285_06059640 NA other downstream 1051401 6049864 ~ 6060269 (+)
CI01000013_06076169_06080164 NA other downstream 1073665 6075400 ~ 6081684 (+)
G81994 NA other downstream 2331048 7335945 ~ 7338239 (+)
G82168 NA other downstream 3023441 8028338 ~ 8041343 (+)
G82581 NA other downstream 4324432 9329329 ~ 9334948 (+)

Expression


Co-expression Network