Gene
RNA
| Item | Value |
|---|---|
| gene id | G81186 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000013 |
| NCBI id | null |
| chromosome length | 12551977 |
| location | 5203982 ~ 5231417 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU92398 | True | 837 | lncRNA | 0.52 | 5 | 5203982 | 5231417 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000013_04989803_04992613 | NA | coding | upstream | 211094 | 4989534 ~ 4992888 (+) |
| CI01000013_04950930_04976334 | LONP2 | coding | upstream | 227272 | 4950930 ~ 4976710 (+) |
| CI01000013_04943413_04948991 | IL34 | coding | upstream | 254726 | 4943413 ~ 4949256 (+) |
| CI01000013_04916607_04940299 | SF3B3, SF3B3.L | coding | upstream | 263674 | 4916313 ~ 4940308 (+) |
| CI01000013_04869003_04877964 | AARS | coding | upstream | 325605 | 4868965 ~ 4878377 (+) |
| CI01000013_05246618_05251189 | NA | coding | downstream | 13377 | 5244794 ~ 5251310 (+) |
| CI01000013_05262407_05267780 | NA | coding | downstream | 30712 | 5262129 ~ 5267965 (+) |
| CI01000013_05402289_05403494 | NA | coding | downstream | 170170 | 5401587 ~ 5403927 (+) |
| CI01000013_05436977_05445492 | NA | coding | downstream | 205560 | 5436977 ~ 5445492 (+) |
| CI01000013_05572116_05579830 | BBS2 | coding | downstream | 339923 | 5571340 ~ 5580139 (+) |
| G81187 | NA | non-coding | upstream | 9295 | 5194269 ~ 5194687 (+) |
| G81184 | NA | non-coding | upstream | 11405 | 5192370 ~ 5192577 (+) |
| G81175 | NA | non-coding | upstream | 25924 | 5177759 ~ 5178058 (+) |
| G81172 | NA | non-coding | upstream | 30178 | 5173521 ~ 5173804 (+) |
| G81160 | NA | non-coding | upstream | 59398 | 5144385 ~ 5144584 (+) |
| G81250 | NA | non-coding | downstream | 48156 | 5279573 ~ 5279938 (+) |
| G81380 | NA | non-coding | downstream | 259641 | 5491058 ~ 5538944 (+) |
| G81306 | NA | non-coding | downstream | 281875 | 5513292 ~ 5578648 (+) |
| G81404 | NA | non-coding | downstream | 383487 | 5614904 ~ 5615250 (+) |
| G81408 | NA | non-coding | downstream | 386409 | 5617826 ~ 5618111 (+) |
| G80845 | NA | other | upstream | 367750 | 4835078 ~ 4836232 (+) |
| CI01000013_04051081_04064651 | NA | other | upstream | 1138153 | 4050837 ~ 4065829 (+) |
| G80062 | NA | other | upstream | 1619198 | 3584008 ~ 3584784 (+) |
| G79309 | NA | other | upstream | 2736811 | 2466765 ~ 2467171 (+) |
| G77695 | NA | other | upstream | 4251013 | 946521 ~ 952969 (+) |
| CI01000013_06050285_06059640 | NA | other | downstream | 824881 | 6049864 ~ 6060269 (+) |
| CI01000013_06076169_06080164 | NA | other | downstream | 847145 | 6075400 ~ 6081684 (+) |
| G81994 | NA | other | downstream | 2104528 | 7335945 ~ 7338239 (+) |
| G82168 | NA | other | downstream | 2796921 | 8028338 ~ 8041343 (+) |
| G82581 | NA | other | downstream | 4097912 | 9329329 ~ 9334948 (+) |
| species | gene id | symbol | gene type | chromosome | NCBI id | location |
|---|---|---|---|---|---|---|
| zebrafish (Danio rerio) | XLOC_012732 | si:ch211-212o1.2 | coding | NC_007129.7 | CM002902.2 | 18000695 ~ 18060544 (+) |
