G81306


Basic Information

Item Value
gene id G81306
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000013
NCBI id null
chromosome length 12551977
location 5513292 ~ 5578648 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU92520
AGCCTATTGATCGCTCTCCCTCTACGCTGGGATATCTGGCATGCTGAAAAGCGGCCTGTATGACTTCAGTAGTCTTCTCATTCACTGAGGAATCAAAGCAGGGAGATGTTTATTCTCTAGTCCAGGGTTTCCCAAACTCAGGGAACTGCATAGAGTGTATGAGTTGATGAGAAGCTTATAATAAAATCATAAACATTTAAAATTAATTTATTTTAAAATTAAAACAAACAATAATTTAAAACACAAACTATTTTTTTTTTTTTTTTTTTTTTTTAACTGCGGACATTTATATTTTGTAGACAAGATACATAGCAGAAAAAACACTTACAATTATCTCTTTATAAAGAACAGACATCTTGTGATAGTCTTATTGGTAGAAATACAAATCAATGCATTGTTTTCCCTCTTTAGCCTTTGTTAAACGATTTTGCAACATTAAACAGTCAGAAGACTGAGAACAACTGGAGGTCATTTATTTTATCATAGAAAGACAACATTCATGCGATGCAAAACGATGACGAAGTACAAACGAACAAATTCACATTGTTGTAGCAAAACATCACGTTGACCTCCTCATTGACAGCAGCTGGAGCCGCAGGAATTGCCCTTACAGACGCAGCCAGAGGCACATTTGCTGCAACCAGACGGGCAGCAGGGACAACAACCTGTGACAGAGAAATAAGTTTAGCCACCTCGTGGGGGAAATTTAAAGTAAACAATTACTATTAGCCTATTAAATTCACGTACTCTTCTTGCAGGTTGTACACTGGCAGTTAGTGCACTTGCAGGTGGCACCACAGTTGCAAGTTCCAGCTACAAAAACACAGACGCAATAAGGAATTAAAATTAAGGTTTCTGATATACCAGCAACAAGTGTATAACAACTTGACTCCAAAAGTAAATTCAACACAACTGTAAATTCATTGTCTAAAACACTTACTCTTGGCGCAGTCGCAAGGATCCATTTTCTTCAAGAGTATCTTTAAAGAGCCCGAAAGTCCCTTGGAAATATCGCTTCACTCAGTTAGTAAACCAGTTGATGGGGAAGGTACCAGGGGACTGATCGCGCGCTGCTTTTATACAGCTCTGACTGAACACAGACCGAGTGCAAAAGCCCGCCCGCTTCAGCCTGCACACGGTGATTCATTAATGAAACTGGGTGCAAACTATCAAACAATCAAGAGTCA
>TU92522
AGCCTATTGATCGCTCTCCCTCTACGCTGGGATATCTGGCATGCTGAAAAGCGGCCTGTATGACTTCAGTAGTCTTCTCATTCACTGAGGAATCAAAGCAGGGAGATGTTTATTCTCTAGTCCAGGGTTTCCCAAACTCAGGGAACTGCATAGAGTGTATGAGTTGATGAGAAGCTTATAATAAAATCATAAACATTTAAAATTAATTTATTTTAAAATTAAAACAAACAATAATTTAAAACACAAACTATTTTTTTTTTTTTTTTTTTTTTAACTGCGGACATTTATATTTTGTAGACAAGATACATAGCAGAAAAAACACTTACAATTATCTCTTTATAAAGAACAGACATCTTGTGATAGTCTTATTGGTAGAAATACAAATCAATGCATTGTTTTCCCTCTTTAGCCTTTGTTAAACGATTTTGCAACATTAAACAGTCAGAAGACTGAGAACAACTGGAGGTCATTTATTTTATCATAGAAAGACAACATTCATGCGATGCAAAACGATGACGAAGTACAAACGAACAAATTCACATTGTTGTAGCAAAACATCACGTTGACCTCCTCATTGACAGCAGCTGGAGCCGCAGGAATTGCCCTTACAGACGCAGCCAGAGGCACATTTGCTGCAACCAGACGGGCAGCAGGGACAACAACCTGTGACAGAGAAATAAGTTTAGCCACCTCGTGGGGGAAATTTAAAGTAAACAATTACTATTAGCCTATTAAATTCACGTACTCTTCTTGCAGGTTGTACACTGGCAGTTAGTGCACTTGCAGGTGGCACCACAGTTGCAAGTTCCAGCTACAAAAACACAGACGCAATAAGGAATTAAAATTAAGGTTTCTGATATACCAGCAACAAGTGTATAACAACTTGACTCCAAAAGTAAATTCAACACAACTGTAAATTCATTGTCTAAAACACTTACTCTTGGCGCAGTCGCAAGGATCCATTTTCTTCAAGAGTATCTTTAAAGAGCCCGAAAGTCCCTTGGAAATATCGCTTCACTCAGTTAGTAAACCAGTTGATGGGGAAGGTACCAGGGGACTGATCGCGCGCTGCTTTTATACAGCTCTGACTGAACACAGACCGAGTGCAAAAGCCCGCCCGCTTCAGCCTGCACACGGTGATTCATTAATGAAACTGGGTGCAAACTATCAAACAATCAAGAGTCA
>TU92524
AGCCTATTGATCGCTCTCCCTCTACGCTGGGATATCTGGCATGCTGAAAAGCGGCCTGTATGACTTCAGTAGTCTTCTCATTCACTGAGGAATCAAAGCAGGGAGATGTTTATTCTCTAGTCCAGGGTTTCCCAAACTCAGGGAACTGCATAGAGTGTATGAGTTGATGAGAAGCTTATAATAAAATCATAAACATTTAAAATTAATTTATTTTAAAATTAAAACAAACAATAATTTAAAACACAAACTATTTTTTTTTTTTTTTTTTTTTTTATAACTGCGGACATTTATATTTTGTAGACAAGATACATAGCAGAAAAAACACTTACAATTATCTCTTTATAAAGAACAGACATCTTGTGATAGTCTTATTGGTAGAAATACAAATCAATGCATTGTTTTCCCTCTTTAGCCTTTGTTAAACGATTTTGCAACATTAAACAGTCAGAAGACTGAGAACAACTGGAGGTCATTTATTTTATCATAGAAAGACAACATTCATGCGATGCAAAACGATGACGAAGTACAAACGAACAAATTCACATTGTTGTAGCAAAACATCACGTTGACCTCCTCATTGACAGCAGCTGGAGCCGCAGGAATTGCCCTTACAGACGCAGCCAGAGGCACATTTGCTGCAACCAGACGGGCAGCAGGGACAACAACTTCTTGCAGGTTGTACACTGGCAGTTAGTGCACTTGCAGGTGGCACCACAGTTGCAAGTTCCAGCTACAAAAACACAGACGCAATAAGGAATTAAAATTAAGGTTTCTGATATACCAGCAACAAGTGTATAACAACTTGACTCCAAAAGTAAATTCAACACAACTGTAAATTCATTGTCTAAAACACTTACTCTTGGCGCAGTCGCAAGGATCCATTTTCTTCAAGAGTATCTTTAAAGAGCCCGAAAGTCCCTTGGAAATATCGCTTCACTCAGTTAGTAAACCAGTTGATGGGGAAGGTCCAAATTGCAGTTTCAGTGCAGCTTCAAAGGGCTCTACACGATCCCAGCCGAGGAATAAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU92520 False 1187 lncRNA 0.39 2 5513292 5569539
TU92522 False 1185 lncRNA 0.39 2 5513292 5569539
TU92524 True 1027 lncRNA 0.38 4 5513292 5578648

Neighbor

gene id symbol gene type direction distance location
CI01000013_05436977_05445492 NA coding upstream 67800 5436977 ~ 5445492 (+)
CI01000013_05402289_05403494 NA coding upstream 109365 5401587 ~ 5403927 (+)
CI01000013_05262407_05267780 NA coding upstream 245327 5262129 ~ 5267965 (+)
CI01000013_05246618_05251189 NA coding upstream 261982 5244794 ~ 5251310 (+)
CI01000013_04989803_04992613 NA coding upstream 520404 4989534 ~ 4992888 (+)
CI01000013_05583328_05584677 B3GNT9 coding downstream 4680 5583328 ~ 5584704 (+)
CI01000013_05607381_05608529 FOXL1 coding downstream 28235 5606883 ~ 5608570 (+)
CI01000013_05636898_05637901 NA coding downstream 58099 5636747 ~ 5638084 (+)
CI01000013_05698947_05741884 ZFPM1 coding downstream 120299 5698947 ~ 5741884 (+)
CI01000013_05808968_05845757 NA coding downstream 230320 5808968 ~ 5846518 (+)
G81250 NA non-coding upstream 233354 5279573 ~ 5279938 (+)
G81186 NA non-coding upstream 281875 5203982 ~ 5231417 (+)
G81187 NA non-coding upstream 318605 5194269 ~ 5194687 (+)
G81184 NA non-coding upstream 320715 5192370 ~ 5192577 (+)
G81175 NA non-coding upstream 335234 5177759 ~ 5178058 (+)
G81404 NA non-coding downstream 36256 5614904 ~ 5615250 (+)
G81408 NA non-coding downstream 39178 5617826 ~ 5618111 (+)
G81411 NA non-coding downstream 43035 5621683 ~ 5625346 (+)
G81412 NA non-coding downstream 50982 5629630 ~ 5630428 (+)
G81322 NA non-coding downstream 78888 5657536 ~ 5672245 (+)
G80845 NA other upstream 677060 4835078 ~ 4836232 (+)
CI01000013_04051081_04064651 NA other upstream 1447463 4050837 ~ 4065829 (+)
G80062 NA other upstream 1928508 3584008 ~ 3584784 (+)
G79309 NA other upstream 3046121 2466765 ~ 2467171 (+)
G77695 NA other upstream 4560323 946521 ~ 952969 (+)
CI01000013_06050285_06059640 NA other downstream 477650 6049864 ~ 6060269 (+)
CI01000013_06076169_06080164 NA other downstream 499914 6075400 ~ 6081684 (+)
G81994 NA other downstream 1757297 7335945 ~ 7338239 (+)
G82168 NA other downstream 2449690 8028338 ~ 8041343 (+)
G82581 NA other downstream 3750681 9329329 ~ 9334948 (+)

Expression


Co-expression Network