G296514


Basic Information

Item Value
gene id G296514
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NW_019172828.1
NCBI id APWO02000046.1
chromosome length 5964967
location 112444 ~ 112700 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU407790
acatatcgtcgctgtccaatgaaaaacacttatctccatttttgtcgatttttagttttctacataatctgaacagacaaactgtcctttacactttgccaaaatttcttgatgaacggaccaatagaaactcttcaaaatgacctgaaataaactctttttacattgacttccattgaaagtttacaaggtttttctctctcctgtaaagttgctgttttggagataagtgtttttcattggacagcgacgatatg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU407790 True 257 lncRNA 0.34 1 112444 112700

Neighbor

gene id symbol gene type direction distance location
slc35b1 slc35b1,LOC107590797,LOC107582861,LOC107678880 coding upstream 100681 283 ~ 11763 (+)
LOC111191049 spop,LOC107754841,LOC100710366 coding downstream 6068 118768 ~ 257003 (+)
LOC103033788 slc4a1 coding downstream 752149 864849 ~ 889789 (+)
ubtf ubtf,LOC102797579,LOC107689086 coding downstream 779395 892095 ~ 910156 (+)
atxn7l3 atxn7l3,LOC108276986,LOC107571925 coding downstream 798759 911459 ~ 924286 (+)
LOC103032830 NA coding downstream 836604 949304 ~ 958431 (+)
G296536 NA non-coding downstream 145012 257712 ~ 257925 (+)
G296539 NA non-coding downstream 150787 263487 ~ 264231 (+)
G296543 NA non-coding downstream 158835 271535 ~ 271788 (+)
G296545 NA non-coding downstream 161360 274060 ~ 274379 (+)
G296549 NA non-coding downstream 237508 350208 ~ 409395 (+)
LOC103026352 ndufa4l,LOC103026352,LOC108413413,LOC108260900,LOC107684646,LOC107590798,LOC103357383,LOC107582867 other upstream 71553 36833 ~ 40891 (+)
mien1 mien1,sepw2a,LOC107566883 other downstream 713678 826378 ~ 834058 (+)
G296679 tlk2,LOC108413572,LOC107660745 other downstream 1079063 1191763 ~ 1200788 (+)
LOC103044283 LOC103044283,LOC108412482 other downstream 1174816 1287516 ~ 1290420 (+)
G296790 tcap,LOC108413611 other downstream 1246412 1359112 ~ 1361935 (+)
LOC111191028 grb2b,grb2,LOC108432081,LOC107719324,LOC108256494,LOC107672691,LOC107672145,LOC107723603 other downstream 2929732 3042432 ~ 3148603 (+)

Expression


Co-expression Network