Fish Transcriptome and Expression Database

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ornamental fish

G296536

Basic Information

Item	Value
gene id	G296536
gene name	NA
gene type	non-coding
species	mexican tetra (Astyanax mexicanus)
category of species	ornamental fish

Chromosome Information

Item	Value
chromosome id	NW_019172828.1
NCBI id	APWO02000046.1
chromosome length	5964967
location	257712 ~ 257925 (+)
genome version	Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU407818
aataatagtctgGTAACtctttataataagactacctttatgaagggtttataaatggtttacaattagttaattaatggttacgaattaggttgtaaatgccttaaaaatcattaataatcagttataacacatacatagaaagggcaaaaatatagatggctgtgggttgactacttggcaaacaacaggtcattgttgccctttctacgta

Function

GO: NA

KEGG: NA

RNA

RNA id	representative	length	rna type	GC content	exon number	start site	end site
TU407818	True	214	lncRNA	0.31	1	257712	257925

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.

Neighbor

gene id	symbol	gene type	direction	distance	location
LOC111191049	spop,LOC107754841,LOC100710366	coding	upstream	709	118768 ~ 257003 (+)
slc35b1	slc35b1,LOC107590797,LOC107582861,LOC107678880	coding	upstream	245949	283 ~ 11763 (+)
LOC103033788	slc4a1	coding	downstream	606924	864849 ~ 889789 (+)
ubtf	ubtf,LOC102797579,LOC107689086	coding	downstream	634170	892095 ~ 910156 (+)
atxn7l3	atxn7l3,LOC108276986,LOC107571925	coding	downstream	653534	911459 ~ 924286 (+)
LOC103032830	NA	coding	downstream	691379	949304 ~ 958431 (+)
LOC103035075	NA	coding	downstream	703356	961281 ~ 964439 (+)
G296514	NA	non-coding	upstream	145012	112444 ~ 112700 (+)
G296539	NA	non-coding	downstream	5562	263487 ~ 264231 (+)
G296543	NA	non-coding	downstream	13610	271535 ~ 271788 (+)
G296545	NA	non-coding	downstream	16135	274060 ~ 274379 (+)
G296549	NA	non-coding	downstream	92283	350208 ~ 409395 (+)
G296556	NA	non-coding	downstream	180392	438317 ~ 439783 (+)
LOC103026352	ndufa4l,LOC103026352,LOC108413413,LOC108260900,LOC107684646,LOC107590798,LOC103357383,LOC107582867	other	upstream	216821	36833 ~ 40891 (+)
mien1	mien1,sepw2a,LOC107566883	other	downstream	568453	826378 ~ 834058 (+)
G296679	tlk2,LOC108413572,LOC107660745	other	downstream	933838	1191763 ~ 1200788 (+)
LOC103044283	LOC103044283,LOC108412482	other	downstream	1029591	1287516 ~ 1290420 (+)
G296790	tcap,LOC108413611	other	downstream	1101187	1359112 ~ 1361935 (+)
LOC111191028	grb2b,grb2,LOC108432081,LOC107719324,LOC108256494,LOC107672691,LOC107672145,LOC107723603	other	downstream	2784507	3042432 ~ 3148603 (+)

Expression

Co-expression Network