G296539


Basic Information

Item Value
gene id G296539
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NW_019172828.1
NCBI id APWO02000046.1
chromosome length 5964967
location 263487 ~ 264231 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU407821
AGCTAGGCCAAACTAATGTAGCATTGGCGAGTAGCCAGCGCACTCGGaagaaaagcacagcgactcggttccaatacatcagctcacagacgccttgtgctgatcgacatcaccctaggagtgatgaggggaaagagcgccatctacccacccagagagagagcgcaaggcaaattgtgctctctcaaggctctggcagctgatggcaagcaagctgcataacagggatttgaaccagcgacctcctgatcatagtggcagcattttAGACCACTTGACCACTCAGCACCCTAAACGCTGCCATCTATGCATATTATGCAGCAGCCAGAcctaggaacctctacaactccgtGCCGAGAAGTCTAGCATGTTGTGTTACACTTTAAGCCTTGGATACACTTCACGATTTATATCAGCCAATAGTATTTGCTGAGGGAGATGACCCTGACCctgcccccaaactgtcaaaaactCCCCTTTCTACACTCCAGCTGAAAAGCCTCAATTGAGCAAAAAGAGCAGCCGCAGGAAATGAGCATAGCGCATGGGCACAACTGTGAACtcgagaagaaaaaaaacttaaacacttaaaaaaaaaagagagaaaaattaagcttgagggtgaatttttttttcagcgcaCTTGTTTATCAGTTTCACAGTTGGGCTTGTGAGATGGAAATTTActcacacaaaatgttaaaactcgCAGGtaaatttttttatacatgATGTTTTCGCACCC

Function

GO:

id name namespace
GO:0022857 transmembrane transporter activity molecular_function
GO:0005215 transporter activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU407821 True 745 lncRNA 0.46 1 263487 264231

Neighbor

gene id symbol gene type direction distance location
LOC111191049 spop,LOC107754841,LOC100710366 coding upstream 6484 118768 ~ 257003 (+)
slc35b1 slc35b1,LOC107590797,LOC107582861,LOC107678880 coding upstream 251724 283 ~ 11763 (+)
LOC103033788 slc4a1 coding downstream 600618 864849 ~ 889789 (+)
ubtf ubtf,LOC102797579,LOC107689086 coding downstream 627864 892095 ~ 910156 (+)
atxn7l3 atxn7l3,LOC108276986,LOC107571925 coding downstream 647228 911459 ~ 924286 (+)
LOC103032830 NA coding downstream 685073 949304 ~ 958431 (+)
LOC103035075 NA coding downstream 697050 961281 ~ 964439 (+)
G296536 NA non-coding upstream 5562 257712 ~ 257925 (+)
G296514 NA non-coding upstream 150787 112444 ~ 112700 (+)
G296543 NA non-coding downstream 7304 271535 ~ 271788 (+)
G296545 NA non-coding downstream 9829 274060 ~ 274379 (+)
G296549 NA non-coding downstream 85977 350208 ~ 409395 (+)
G296556 NA non-coding downstream 174086 438317 ~ 439783 (+)
G296563 NA non-coding downstream 249960 514191 ~ 538393 (+)
LOC103026352 ndufa4l,LOC103026352,LOC108413413,LOC108260900,LOC107684646,LOC107590798,LOC103357383,LOC107582867 other upstream 222596 36833 ~ 40891 (+)
mien1 mien1,sepw2a,LOC107566883 other downstream 562147 826378 ~ 834058 (+)
G296679 tlk2,LOC108413572,LOC107660745 other downstream 927532 1191763 ~ 1200788 (+)
LOC103044283 LOC103044283,LOC108412482 other downstream 1023285 1287516 ~ 1290420 (+)
G296790 tcap,LOC108413611 other downstream 1094881 1359112 ~ 1361935 (+)
LOC111191028 grb2b,grb2,LOC108432081,LOC107719324,LOC108256494,LOC107672691,LOC107672145,LOC107723603 other downstream 2778201 3042432 ~ 3148603 (+)

Expression


Co-expression Network