G296545


Basic Information

Item Value
gene id G296545
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NW_019172828.1
NCBI id APWO02000046.1
chromosome length 5964967
location 274060 ~ 274379 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU407827
TTCAGTTCTTCgggcctgacactctggctgaaactccaccctctttgactaggtctgcctaacaacagagcaatctatattctgattggctcaacgagagtacattataatatacagccgatggattggcaagcgtgagaaataccatgtgtggcgtgtgaactcactgaggtgcgtgtgtcacacgctcaaagcgtgagacttgagaacactgtttACAACATACAGATTTACACACCTATTTAAGATAAATATCACctgatttaaatgaaaaaagtgtGATATTATATTACTGTTCAATGTTGAAAAAGTCAGTTGCT

Function

GO:

id name namespace
GO:0050877 nervous system process biological_process
GO:0007600 sensory perception biological_process
GO:0007606 sensory perception of chemical stimulus biological_process
GO:0007608 sensory perception of smell biological_process

KEGG:

id description
ko04740 Olfactory transduction

RNA

RNA id representative length rna type GC content exon number start site end site
TU407827 True 320 lncRNA 0.40 1 274060 274379

Neighbor

gene id symbol gene type direction distance location
LOC111191049 spop,LOC107754841,LOC100710366 coding upstream 17057 118768 ~ 257003 (+)
slc35b1 slc35b1,LOC107590797,LOC107582861,LOC107678880 coding upstream 262297 283 ~ 11763 (+)
LOC103033788 slc4a1 coding downstream 590470 864849 ~ 889789 (+)
ubtf ubtf,LOC102797579,LOC107689086 coding downstream 617716 892095 ~ 910156 (+)
atxn7l3 atxn7l3,LOC108276986,LOC107571925 coding downstream 637080 911459 ~ 924286 (+)
LOC103032830 NA coding downstream 674925 949304 ~ 958431 (+)
LOC103035075 NA coding downstream 686902 961281 ~ 964439 (+)
G296543 NA non-coding upstream 2272 271535 ~ 271788 (+)
G296539 NA non-coding upstream 9829 263487 ~ 264231 (+)
G296536 NA non-coding upstream 16135 257712 ~ 257925 (+)
G296514 NA non-coding upstream 161360 112444 ~ 112700 (+)
G296549 NA non-coding downstream 75829 350208 ~ 409395 (+)
G296556 NA non-coding downstream 163938 438317 ~ 439783 (+)
G296563 NA non-coding downstream 239812 514191 ~ 538393 (+)
G296587 NA non-coding downstream 294146 568525 ~ 569136 (+)
G296589 NA non-coding downstream 296114 570493 ~ 570815 (+)
LOC103026352 ndufa4l,LOC103026352,LOC108413413,LOC108260900,LOC107684646,LOC107590798,LOC103357383,LOC107582867 other upstream 233169 36833 ~ 40891 (+)
mien1 mien1,sepw2a,LOC107566883 other downstream 551999 826378 ~ 834058 (+)
G296679 tlk2,LOC108413572,LOC107660745 other downstream 917384 1191763 ~ 1200788 (+)
LOC103044283 LOC103044283,LOC108412482 other downstream 1013137 1287516 ~ 1290420 (+)
G296790 tcap,LOC108413611 other downstream 1084733 1359112 ~ 1361935 (+)
LOC111191028 grb2b,grb2,LOC108432081,LOC107719324,LOC108256494,LOC107672691,LOC107672145,LOC107723603 other downstream 2768053 3042432 ~ 3148603 (+)

Expression


Co-expression Network