G296599


Basic Information

Item Value
gene id G296599
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NW_019172828.1
NCBI id APWO02000046.1
chromosome length 5964967
location 608002 ~ 608307 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU407886
cagcgctgcattgaggtgtgataggaggaatagcggtgctctcgtgtctgtgccggagctcctctgagctcaaaccagactctgtaagttttccgaggcggccgtgaccaacgctcgcgagaactgcgacctgctttccgacctttagttctaacagttctacaaggactactggttcattctttacaaactaacatacagacactctggcagaagctggaaagagaccaaatatgtctgtgaacgccagaaaacgagaaagagaaactaatccgcctgaaatatttattacactctacaactgta

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU407886 True 306 lncRNA 0.47 1 608002 608307

Neighbor

gene id symbol gene type direction distance location
LOC111191049 spop,LOC107754841,LOC100710366 coding upstream 350999 118768 ~ 257003 (+)
slc35b1 slc35b1,LOC107590797,LOC107582861,LOC107678880 coding upstream 596239 283 ~ 11763 (+)
LOC103033788 slc4a1 coding downstream 256542 864849 ~ 889789 (+)
ubtf ubtf,LOC102797579,LOC107689086 coding downstream 283788 892095 ~ 910156 (+)
atxn7l3 atxn7l3,LOC108276986,LOC107571925 coding downstream 303152 911459 ~ 924286 (+)
LOC103032830 NA coding downstream 340997 949304 ~ 958431 (+)
LOC103035075 NA coding downstream 352974 961281 ~ 964439 (+)
G296589 NA non-coding upstream 37187 570493 ~ 570815 (+)
G296587 NA non-coding upstream 38866 568525 ~ 569136 (+)
G296563 NA non-coding upstream 69609 514191 ~ 538393 (+)
G296556 NA non-coding upstream 168219 438317 ~ 439783 (+)
G296549 NA non-coding upstream 198607 350208 ~ 409395 (+)
G296607 NA non-coding downstream 27722 636029 ~ 705069 (+)
G296612 NA non-coding downstream 53001 661308 ~ 694729 (+)
G296616 NA non-coding downstream 99564 707871 ~ 714761 (+)
G296629 NA non-coding downstream 196585 804892 ~ 805127 (+)
G296640 NA non-coding downstream 239823 848130 ~ 919503 (+)
LOC103026352 ndufa4l,LOC103026352,LOC108413413,LOC108260900,LOC107684646,LOC107590798,LOC103357383,LOC107582867 other upstream 567111 36833 ~ 40891 (+)
mien1 mien1,sepw2a,LOC107566883 other downstream 218071 826378 ~ 834058 (+)
G296679 tlk2,LOC108413572,LOC107660745 other downstream 583456 1191763 ~ 1200788 (+)
LOC103044283 LOC103044283,LOC108412482 other downstream 679209 1287516 ~ 1290420 (+)
G296790 tcap,LOC108413611 other downstream 750805 1359112 ~ 1361935 (+)
LOC111191028 grb2b,grb2,LOC108432081,LOC107719324,LOC108256494,LOC107672691,LOC107672145,LOC107723603 other downstream 2434125 3042432 ~ 3148603 (+)

Expression


Co-expression Network