G296616


Basic Information

Item Value
gene id G296616
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NW_019172828.1
NCBI id APWO02000046.1
chromosome length 5964967
location 707871 ~ 714761 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU407906
attttaaagtgttaccgaaattaGACATGTTACTCAATTAGAACTTAATGGCAGCAACACATGAGAAAAAAGTTTGGAGAGGGTCAAGGATTTGCCATTTCATGATGtgcagtgttctcaagtctcacgctttgagagtgtgacacacgcacctcagcgagttcacacgctcacacgccacacatggtatgtCTCACGCTCGCCtatccatcggctgtatattataatgtactatcgttgagccaatcagaatatagatcgctctgttgttaggcagacctagtcaaagtgggtggagtttcagccaggggtgtcaggcgcgaagaactgtccgattcgaaaGTCCCACCCCCCAACTCACTTCCAACAAACTTCAAAATTTGAGAGCCGGATGATGTGCTATATGTGTTTTGTCCAAGACTAGACAACAGGATGGCCAGTTCTGCACCAGGACTCTTCTTCTGTGAAGCCATGCTGTTGTAAAGGATGCAGAAGCATGTGGTTTAGCATATGTCTTGGTGACATTTGTAAGACCTTGTCCTTGTAAGGGGCAAAAAAAATTgtagtgttcaggtaaatttctgtcaAATCATTCTATGTTTCTTAAGGAAAACACATGCTGTTGTAGTGGATGCAGCAGCATGTGGTTTaagcattgtcttgctgaaatacactctaatatttcaATGGACCCCCTTAAGCTTTGATtgctttacacactttacactgtggcattgtttcgataagcttctgcagtgtcacaagatttatttgatcaatccagtgttgctggattaatttttcaccaagatcttgcagcagcattgatgatggtagagtctgaccactgcacaaagcctctcttctccatccagcacatcccaacgattctcaatgaggttaagatctggactctgtggtgaactctctcaatacatgtgtaaaaatgatgatctcatgttttttgaaccctgaactctttcacaattccagcaccatgagtcctggcattgtcatcttggaatatccattgatggaataacctggtctatattcagtatattcaggtagtcagctgacctcattctttcagcacatactgctgctgaaccttaacctgcagaccaactgcagcatcaaccccacatcatttacttacttaaatccaggtccAGGTGGCGCCCTTTTTGTTTTTGGGCCGGGGTGGTGTATCTAAGGCCTTCTTTGAAAGGGGCAAAAGTAAGAAATGCCGAAAAGAATGAATGCTTCCAACAAGACAACATTTTTCTTCCAAAACTCCAGCAATTGGCCTCCTCACTTCCCTCACTTGCATCACAATGGTagaaacaagattttttttgtaaagaaaaacagaatgcTTAATAGTATTTAAAGGTTTTAGGGCAACATACTGAATGCTCCCATCCAGGCAATCACATCCCGTCTTATTAGGGAAAGAACTTACGTACAtattccagcaagacaatgccaAAGCTCATGCCGCATCTATTACAAAAGCATGGATCCATAGAAGAAGAGTGTGGTTGAGGAACTGGCCAACCAGAAAGCATTCAGCACAGCATCTTGAGGTGGATCTTTGAGAAGGATCTTTGGAATGCTTTGCTGCCATCAAGTTCTAAATGCATATAAGAAAGTTTTTCATGGTTTCAATGATTTTTCATAGTAAAAAGTCTctgatgtgttttattttcttttactttaaataaaatataggtGTATGAGATCTGCTAATCATTGAATTCTGTATCTACGTTCATTTATCTTCATTCTACACAGTGTTCCAACTTTTTAGGATCAGGGGCTGAACTTTCCTGTCATTTTTTTGATGACATAATCTCATCACGAGCAACATTTCCAGTATGGTGACATGGCACTTTCCCTTTCTTCGTGAAGAACATGACCAACGCTGGTACACTGATGCTGAGCTGGCCAAGGAAACCAACCACATTAGAGCTTCTAATGGACCACAGTCTACCACATGTGTCCCATTCAGCAGCCATGGCATGAATCATTTACCCAGTGGCCTGGATTTAGTTTGCCTTgaggagaaatggagagagagagagagagagagagagagagagaggagaggaggcaCATATGGTGGTGGGGATATGAGCCAGACGTGGCGAGATAGAGTGGATAGAAATCATAAGTGTGGATGAATCACAAGGATATCAGTGTGGGAATTGCAGTGGTGATGAGTCTTTGAGTGTTGTTTGTTAGGGCTGTAACGATACATGGTGTCGCATTGTATTACTGTCGGCGTTCAAAGAAATGGCTCTCGAGTTTAATCGCTTGTGGCGTCAAATCATTTGTTCTGACTGAAGGTAATAAAGGGAAAAATTCAATTGCTCTTGAGCTCAGAATTGGATTTTGTTGGGAAACGTATTTAAGACCAGTGGCTTGCGTTTTTCGCTTGTGGATATAACCTTAAAAGAAAGAGTTTTTCaagggttctttagtaaagATAACCAAGCACTCTATCTTTGCCTTTGGATCGAAATTGTAATCACCTGCGAAAACAGAAGAAAGTGTCAGGTTGCAACGCCATTCAGAAGGAAGATTGATTTAGATTGAAGTAGTAGTTGTTGGGATGGgtcatctccaccaagacaaattTGTGACTATTGTAAATTGTCACTATAGATGAGCTGCTAGGTGGAGATGACGAATAAAACTCTGGGCcccatcttacaccctgcacaaggtgtgtTGTGATGCTTACCGCTATCTTACAACACAGCAAGTGTCATTTTTTACACCTTGTGCCTTGTGTCTTTAACagtgcttgtaaatatatatttctatgcCAATGGGTGTGACGGTCCTGAACTAAGGGGTGTTCAGGTAATTTTTTCACATATTGCTATGTtgtcaacagaaaacacaggtgccccactgactgaaaacaacctacaCTGTgtctgttggcagctatgcaaacttttacatcaacactaaacagaatgaacgagtgtgaacgagcaggtcagttttttttcttgcaaagCTTAagttggacatgtccaggtagctgcgcctctgaaatagcaatctaccaaagtcagagcgcaCTGAGGTGAGGCGGTATAAACGGGAAATATGATGCATTGCAATGTACGTGTGTGTCCGAGTGtgtgcgtctctctctctctctctctctatatatatatatatatatatatatatataagcatgtGTATTCGGAAACAGACACTGTATGTGGGTTTATCAGAAAAAAGATATCTgccgaaagagagagagagagagaaagagacggtgggagagagagagctaagtATAGATCTGAGTCATTACAAAAGTAAAGGTCGGTAAATGTCACCTTTCGAGATGTCGCATACACTTGCTGTTCCTGGATCAGCTTTTCTAAGCCCAcagaaccaccaccaccaccaccactaccaccattAGGACTGAAAGCAATGCTGCTCACTAGGCCTCGTCCTTAAAGGGCAGCTCCTGCTGCAACCTTTTAACACTTGGTGAAGCACCCTGATTGGAGGAATCTGACCGTTTCTTTTTCTGTTCctgttttttcatttcttcttcgTGGGCATGTCAGGAATGGAGAATAAATGAGACTGAACTAAAAATGAGGAAGGATAGCATGGATTGTTTTTCTATTGATTTGAGGCATTGCATTGTCTCTTATTCTCAAGAGAGTCTCCAGAGCCAGGTCTAGAAGAAAGAAGTTCATCAGGAATCGGGTATTAGGAAGTTTAGCAGGATTCTAAAGGTGTGATTGCTACTTCAACAATTTCGCTTCAAGGATCAACACCTTCAAGGATCTTTACAGTTCATACATCCGAGAGGGGCTgttgctgcttctgctgctgctgttttgtgTTAGTGCTATACTTGTCCAGTAAGTGTCCACAAGGATGGCCTGGTGCACTGATTGATTGATACTTTGATTGGTTACTTTGTTAATGGAAAACATGAACACATGgtttaatacatacatacatacatgtatgGCGGACTATACATCTTCAAAGCTCTATAATAGACATTAAGGAATGCTATAAGGCCATTTGGATTTGGTTGGTGGTGCAGAATAAACGATACCCTCAGATGCCTGGCTCTCGTCATCTGGAACATCAAAGGAGCTCAGGTGTCGTGAAAAGTGAAGAGTGTAAAGCGTCTGAAGCGTAATTCAGATCAAACGGTCACCTCAGACTTCAGCTACGGGTGTGATCTGAGCTGGGAGGAGGCCTCGTGAAGGCCTCGACCTTGACGTTTGCGGCTAACGCGGCGGTAATTATGCAGAAGTGGTTTTGGAGCAAGTGGTTTCTTTAAGCCCAGATGATCCAGAGCATCTATGTGATGTCCATACTGGGTGCCGCTGGAGCTTAACAGGTCTGGTGCAGTCTGGTCTCACAGACTGGCCAACGGTTCAACGGAACCAGTTCGTGAACGACCAGTAAAATCTCACACTTCCCACAGTCCTTCTTGCTCTTCCTGCTCCTTCATTGTCTTCCTtctcacttcttcttcttctttctctttcctccgCTTGACGATGTCGTCCCTTCACTCGTCCCTCAGGCCTGTGGTGGAGAAGGGTCAGGCTGAGGACCCCCATCCACCCTCACCAc
>TU407907
attttaaagtgttaccgaaattaGACATGTTACTCAATTAGAACTTAATGGCAGCAACACATGAGAAAAAAGTTTGGAGAGGGTCAAGGATTTGCCATTTCATGATGtgcagtgttctcaagtctcacgctttgagagtgtgacacacgcacctcagcgagttcacacgctcacacgccacacatggtatgtCTCACGCTCGCCtatccatcggctgtatattataatgtactatcgttgagccaatcagaatatagatcgctctgttgttaggcagacctagtcaaagtgggtggagtttcagccaggggtgtcaggcgcgaagaactgtccgattcgaaaGTCCCACCCCCCAACTCACTTCCAACAAACTTCAAAATTTGAGAGCCGGATGATGTGCTATATGTGTTTTGTCCAAGACTAGACAACAGGATGGCCAGTTCTGCACCAGGACTCTTCTTCTGTGAAGCCATGCTGTTGTAAAGGATGCAGAAGCATGTGGTTTAGCATATGTCTTGGTGACATTTGTAAGACCTTGTCCTTGTAAGGGGCAAAAAAAATTgtagtgttcaggtaaatttctgtcaAATCATTCTATGTTTCTTAAGGAAAACACATGCTGTTGTAGTGGATGCAGCAGCATGTGGTTTaagcattgtcttgctgaaatacactctaatatttcaATGGACCCCCTTAAGCTTTGATtgctttacacactttacactgtggcattgtttcgataagcttctgcagtgtcacaagatttatttgatcaatccagtgttgctggattaatttttcaccaagatcttgcagcagcattgatgatggtagagtctgaccactgcacaaagcctctcttctccatccagcacatcccaacgattctcaatgaggttaagatctggactctgtggtgaactctctcaatacatgtgtaaaaatgatgatctcatgttttttgaaccctgaactctttcacaattccagcaccatgagtcctggcattgtcatcttggaatatccattgatggaataacctggtctatattcagtatattcaggtagtcagctgacctcattctttcagcacatactgctgctgaaccttaacctgcagaccaactgcagcatcaaccccacatcatttacttacttaaatccaggtccAGGTGGCGCCCTTTTTGTTTTTGGGCCGGGGTGGTGTATCTAAGGCCTTCTTTGAAAGGGGCAAAAGTAAGAAATGCCGAAAAGAATGAATGCTTCCAACAAGACAACATTTTTCTTCCAAAACTCCAGCAATTGGCCTCCTCACTTCCCTCACTTGCATCACAATGGTagaaacaagattttttttgtaaagaaaaacagaatgcTTAATAGTATTTAAAGGTTTTAGGGCAACATACTGAATGCTCCCATCCAGGCAATCACATCCCGTCTTATTAGGGAAAGAACTTACGTACAtattccagcaagacaatgccaAAGCTCATGCCGCATCTATTACAAAAGCATGGATCCATAGAAGAAGAGTGTGGTTGAGGAACTGGCCAACCAGAAAGCATTCAGCACAGCATCTTGAGGTGGATCTTTGAGAAGGATCTTTGGAATGCTTTGCTGCCATCAAGTTCTAAATGCATATAAGAAAGTTTTTCATGGTTTCAATGATTTTTCATAGTAAAAAGTCTctgatgtgttttattttcttttactttaaataaaatataggtGTATGAGATCTGCTAATCATTGAATTCTGTATCTACGTTCATTTATCTTCATTCTACACAGTGTTCCAACTTTTTAGGATCAGGGGCTGAACTTTCCTGTCATTTTTTTGATGACATAATCTCATCACGAGCAACATTTCCAGTATGGTGACATGGCACTTTCCCTTTCTTCGTGAAGAACATGACCAACGCTGGTACACTGATGCTGAGCTGGCCAAGGAAACCAACCACATTAGAGCTTCTAATGGACCACAGTCTACCACATGTGTCCCATTCAGCAGCCATGGCATGAATCATTTACCCAGTGGCCTGGATTTAGTTTGCCTTgaggagaaatggagagagagagagagagagagagagagagagaggagaggaggcaCATATGGTGGTGGGGATATGAGCCAGACGTGGCGAGATAGAGTGGATAGAAATCATAAGTGTGGATGAATCACAAGGATATCAGTGTGGGAATTGCAGTGGTGATGAGTCTTTGAGTGTTGTTTGTTAGGGCTGTAACGATACATGGTGTCGCATTGTATTACTGTCGGCGTTCAAAGAAATGGCTCTCGAGTTTAATCGCTTGTGGCGTCAAATCATTTGTTCTGACTGAAGGTAATAAAGGGAAAAATTCAATTGCTCTTGAGCTCAGAATTGGATTTTGTTGGGAAACGTATTTAAGACCAGTGGCTTGCGTTTTTCGCTTGTGGATATAACCTTAAAAGAAAGAGTTTTTCaagggttctttagtaaagATAACCAAGCACTCTATCTTTGCCTTTGGATCGAAATTGTAATCACCTGCGAAAACAGAAGAAAGTGTCAGGTTGCAACGCCATTCAGAAGGAAGATTGATTTAGATTGAAGTAGTAGTTGTTGGGATGGgtcatctccaccaagacaaattTGTGACTATTGTAAATTGTCACTATAGATGAGCTGCTAGGTGGAGATGACGAATAAAACTCTGGGCcccatcttacaccctgcacaaggtgtgtTGTGATGCTTACCGCTATCTTACAACACAGCAAGTGTCATTTTTTACACCTTGTGCCTTGTGTCTTTAACagtgcttgtaaatatatatttctatgcCAATGGGTGTGACGGTCCTGAACTAAGGGGTGTTCAGGTAATTTTTTCACATATTGCTATGTtgtcaacagaaaacacaggtgccccactgactgaaaacaacctacaCTGTgtctgttggcagctatgcaaacttttacatcaacactaaacagaatgaacgagtgtgaacgagcaggtcagttttttttcttgcaaagCTTAagttggacatgtccaggtagctgcgcctctgaaatagcaatctaccaaagtcagagcgcaCTGAGGCCACTAGATGTGGTAGAAAAGGACTGGATCCACCCCCCCTTCCCATTGGTGGACCACACCTGCTCTTCATTTACAAATGCTTTTAGAGGAGTCGAGTCTTGTGTAGTGTTCGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU407906 True 4643 lncRNA 0.43 2 707871 713200
TU407907 False 3217 lncRNA 0.42 3 707871 714761

Neighbor

gene id symbol gene type direction distance location
LOC111191049 spop,LOC107754841,LOC100710366 coding upstream 450868 118768 ~ 257003 (+)
slc35b1 slc35b1,LOC107590797,LOC107582861,LOC107678880 coding upstream 696108 283 ~ 11763 (+)
LOC103033788 slc4a1 coding downstream 150088 864849 ~ 889789 (+)
ubtf ubtf,LOC102797579,LOC107689086 coding downstream 177334 892095 ~ 910156 (+)
atxn7l3 atxn7l3,LOC108276986,LOC107571925 coding downstream 196698 911459 ~ 924286 (+)
LOC103032830 NA coding downstream 234543 949304 ~ 958431 (+)
LOC103035075 NA coding downstream 246520 961281 ~ 964439 (+)
G296607 NA non-coding upstream 2802 636029 ~ 705069 (+)
G296612 NA non-coding upstream 13142 661308 ~ 694729 (+)
G296599 NA non-coding upstream 99564 608002 ~ 608307 (+)
G296589 NA non-coding upstream 137056 570493 ~ 570815 (+)
G296587 NA non-coding upstream 138735 568525 ~ 569136 (+)
G296629 NA non-coding downstream 90131 804892 ~ 805127 (+)
G296640 NA non-coding downstream 133369 848130 ~ 919503 (+)
G296646 tmub2,LOC107708558,LOC107566939,LOC107754824,LOC107660620 non-coding downstream 214009 928770 ~ 931596 (+)
G296645 vat1,LOC107567018,LOC108413532 non-coding downstream 250681 965442 ~ 1053569 (+)
G296660 NA non-coding downstream 395527 1110288 ~ 1111113 (+)
LOC103026352 ndufa4l,LOC103026352,LOC108413413,LOC108260900,LOC107684646,LOC107590798,LOC103357383,LOC107582867 other upstream 666980 36833 ~ 40891 (+)
mien1 mien1,sepw2a,LOC107566883 other downstream 111617 826378 ~ 834058 (+)
G296679 tlk2,LOC108413572,LOC107660745 other downstream 477002 1191763 ~ 1200788 (+)
LOC103044283 LOC103044283,LOC108412482 other downstream 572755 1287516 ~ 1290420 (+)
G296790 tcap,LOC108413611 other downstream 644351 1359112 ~ 1361935 (+)
LOC111191028 grb2b,grb2,LOC108432081,LOC107719324,LOC108256494,LOC107672691,LOC107672145,LOC107723603 other downstream 2327671 3042432 ~ 3148603 (+)

Expression


Co-expression Network