G296640


Basic Information

Item Value
gene id G296640
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NW_019172828.1
NCBI id APWO02000046.1
chromosome length 5964967
location 848130 ~ 919503 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU407939
CTTACTTTGTTTTTGATAATACATTTGTAAGAAACACACATACCTTGTCCACGTCAGCAAagatatttttgattttttgtcCAGCTACTCCTCCTTTCCGTGGCAAAATTTTCATCAGCTGGGAAGAGTGGTAATCAAGTTGCTGCATGAACTTAGATCTCAGTGGGACAGTGGTGATGCGTGCAAACTCTGCTTCAACctacaaaacatttaaaggtcaccttccgcgaaaatccgatttttcttgttttttgtggaatacagtaggtctctccgagttgaatgtgtacacctgcacattaaactgttttgcagcccccattgtctgcaggagctaagcaaagaaatcccccctccccccctccgaaaaacgggtgaattttgaattatctttctgcctacgtaggcagaaactcacagaccagcccaccttggctcgagaaactcccagaggcggagctgaagcgacgcaacatcaccgctcatcagttaggaggtgggaggcagtgagcggcagagcggtggaggggcgtcgcagtgctcctagccaatcagaggagagatatttgcatgctgtttgcatgtatgaatattcatgagcaaagctggaatccggtcattttggacacacccctaaaacagtcctttaaaaaagagctatacagagacacctgagcactttttttttacaaaaacggctcacatgtcattcattcatactagagaccacaactagacattttaaaatgaaagaaaaaacgacggaaggtgacctttaagtggtctcttatttttttc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU407939 True 798 lncRNA 0.44 2 848130 919503

Neighbor

gene id symbol gene type direction distance location
LOC111191049 spop,LOC107754841,LOC100710366 coding upstream 591127 118768 ~ 257003 (+)
slc35b1 slc35b1,LOC107590797,LOC107582861,LOC107678880 coding upstream 836367 283 ~ 11763 (+)
LOC103032830 NA coding downstream 29801 949304 ~ 958431 (+)
LOC103035075 NA coding downstream 41778 961281 ~ 964439 (+)
rnd2 rnd2,LOC108413538,LOC108273890,LOC107708553,LOC107552458,LOC107754744,LOC107567027 coding downstream 116843 1036346 ~ 1076555 (+)
LOC103044572 NA coding downstream 414837 1334340 ~ 1350920 (+)
LOC103028117 crhr1,LOC108413653,LOC107662410,LOC108261365 coding downstream 925477 1844980 ~ 2121494 (+)
G296629 NA non-coding upstream 43003 804892 ~ 805127 (+)
G296616 NA non-coding upstream 133369 707871 ~ 714761 (+)
G296607 NA non-coding upstream 143061 636029 ~ 705069 (+)
G296612 NA non-coding upstream 153401 661308 ~ 694729 (+)
G296599 NA non-coding upstream 239823 608002 ~ 608307 (+)
G296646 tmub2,LOC107708558,LOC107566939,LOC107754824,LOC107660620 non-coding downstream 9267 928770 ~ 931596 (+)
G296645 vat1,LOC107567018,LOC108413532 non-coding downstream 45939 965442 ~ 1053569 (+)
G296660 NA non-coding downstream 190785 1110288 ~ 1111113 (+)
G296754 NA non-coding downstream 307892 1227395 ~ 1230550 (+)
G296768 NA non-coding downstream 376742 1296245 ~ 1300826 (+)
mien1 mien1,sepw2a,LOC107566883 other upstream 14072 826378 ~ 834058 (+)
LOC103026352 ndufa4l,LOC103026352,LOC108413413,LOC108260900,LOC107684646,LOC107590798,LOC103357383,LOC107582867 other upstream 807239 36833 ~ 40891 (+)
G296679 tlk2,LOC108413572,LOC107660745 other downstream 272260 1191763 ~ 1200788 (+)
LOC103044283 LOC103044283,LOC108412482 other downstream 368013 1287516 ~ 1290420 (+)
G296790 tcap,LOC108413611 other downstream 439609 1359112 ~ 1361935 (+)
LOC111191028 grb2b,grb2,LOC108432081,LOC107719324,LOC108256494,LOC107672691,LOC107672145,LOC107723603 other downstream 2122929 3042432 ~ 3148603 (+)
LOC103030733 NA other downstream 2630824 3550327 ~ 3640614 (+)

Expression


Co-expression Network