G296660


Basic Information

Item Value
gene id G296660
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NW_019172828.1
NCBI id APWO02000046.1
chromosome length 5964967
location 1110288 ~ 1111113 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU407964
CCACACTCACAAAAGATGGTGAAGGAAGGCAAGCACCAGCTGATCTTAGATTTCATTTTATTCAGGAATCAAGATTACCTTATTAACCATCTTGTGCCCAAAAGAGTGGCACAGATATTCTGACAGCACGGACAGCAGACGGTTAACTGGAAAACTGGCTCACCGAAGAGCCTTTTTCATCACTCGTGCATACTTTCGTACTTTAAACGACTCCAGCTCGTTTGTCTCCCACCGCGTCTCGCCTCTGCATTGTTAAACCTTTCACACGTTATCATTTCCTTTCCTCTATAATCACTGTGATTATCACATACAGACAGTGTGCAATTCAACGGGAGCTTCTAACTACGTtcaaagagataaagagagagagacaaaatgaaagagaagaaaaaaagaaagtgcaaagaagtgaggagagagaaaaaaaaaggagaggagGGGGGAAATCTGGAGACCCACAGACAGACGATACGTGGACTCTGACCTAGAAACGAAagggtaacacttcctatgaatgcTGTATTCATtttgcattatgaatgcatttataatgtattacgTGAGGCACATAATGCCTTGTTATGATAACTGCCATAAGCTTGAACATAACTCATAAATACTTAAAGGGCACAAGTATGTGACTTAAGAAAGACAAGTACAttgtaaatactaatgttatAATGCAGGTTATAACACAGGTTTGGTCCTTTTTGTATTATAGGATTACAAAAAGtagcatttacagtttttttttgcttaaacatTATTACAACTTAAACATTCCTTCAAATGCAATAACATTACgaaaaaacacacttcacttgaA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU407964 True 826 lncRNA 0.38 1 1110288 1111113

Neighbor

gene id symbol gene type direction distance location
rnd2 rnd2,LOC108413538,LOC108273890,LOC107708553,LOC107552458,LOC107754744,LOC107567027 coding upstream 33733 1036346 ~ 1076555 (+)
LOC103035075 NA coding upstream 145849 961281 ~ 964439 (+)
LOC103032830 NA coding upstream 151857 949304 ~ 958431 (+)
atxn7l3 atxn7l3,LOC108276986,LOC107571925 coding upstream 186002 911459 ~ 924286 (+)
ubtf ubtf,LOC102797579,LOC107689086 coding upstream 200132 892095 ~ 910156 (+)
LOC103044572 NA coding downstream 223227 1334340 ~ 1350920 (+)
LOC103028117 crhr1,LOC108413653,LOC107662410,LOC108261365 coding downstream 733867 1844980 ~ 2121494 (+)
LOC111191060 ntn1,LOC107583316,LOC107728387,LOC107672692,LOC107719327,LOC107703884,LOC107563365 coding downstream 1438037 2549150 ~ 2688790 (+)
LOC111191061 NA coding downstream 1563635 2674748 ~ 2678277 (+)
LOC111191042 LOC108432083 coding downstream 1657551 2768664 ~ 2925185 (+)
G296645 vat1,LOC107567018,LOC108413532 non-coding upstream 56719 965442 ~ 1053569 (+)
G296646 tmub2,LOC107708558,LOC107566939,LOC107754824,LOC107660620 non-coding upstream 178692 928770 ~ 931596 (+)
G296640 NA non-coding upstream 190785 848130 ~ 919503 (+)
G296629 NA non-coding upstream 305161 804892 ~ 805127 (+)
G296616 NA non-coding upstream 395527 707871 ~ 714761 (+)
G296754 NA non-coding downstream 116282 1227395 ~ 1230550 (+)
G296768 NA non-coding downstream 185132 1296245 ~ 1300826 (+)
G296791 NA non-coding downstream 262720 1373833 ~ 1375344 (+)
G296812 NA non-coding downstream 384105 1495218 ~ 1495445 (+)
G296831 NA non-coding downstream 439181 1550294 ~ 1550657 (+)
mien1 mien1,sepw2a,LOC107566883 other upstream 276230 826378 ~ 834058 (+)
LOC103026352 ndufa4l,LOC103026352,LOC108413413,LOC108260900,LOC107684646,LOC107590798,LOC103357383,LOC107582867 other upstream 1069397 36833 ~ 40891 (+)
G296679 tlk2,LOC108413572,LOC107660745 other downstream 80650 1191763 ~ 1200788 (+)
LOC103044283 LOC103044283,LOC108412482 other downstream 176403 1287516 ~ 1290420 (+)
G296790 tcap,LOC108413611 other downstream 247999 1359112 ~ 1361935 (+)
LOC111191028 grb2b,grb2,LOC108432081,LOC107719324,LOC108256494,LOC107672691,LOC107672145,LOC107723603 other downstream 1931319 3042432 ~ 3148603 (+)
LOC103030733 NA other downstream 2439214 3550327 ~ 3640614 (+)

Expression


Co-expression Network