G296768


Basic Information

Item Value
gene id G296768
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NW_019172828.1
NCBI id APWO02000046.1
chromosome length 5964967
location 1296245 ~ 1300826 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU408110
ATCCAGTATGTCCGATGTAGACACCCAGCTCCTCTCCTCGGGACCGTACCCCTCCCAGTCCACTAGATACTGGATGTGCCCCCGTCTCCGACGTGAATCCACAATGGTGTTGACTTTGTAGGCAGGACTGCCGTCGATGTCCAGAGCTGGAGGTGGTGATGAGAGAGGGGAGGCATCATCCAGTGGACCAGGAATAACCGGCCTGAGGAGAGACACATGAAAACTGGGTGAGACTCTGTAGTTACGGGGCAAAAGCAATTTATAAGTCACATTGTTTATTCTTTGCAGTATTCTGAAGGGTCCAACAAACCGTGGACTGAGTTTACGACAGGGCAGGCGCAACTTGAGGTCCCTTGTGGAAAGCCAAACTCTGTCACCTGGGTTAAATAAAGGGGTTTTACCTCTATGTCGATCTGCCTGTGCTTTTTGTCGTCTGACAGCCAAACCCAGACGTGCGTGTGTCTGTTCCCAAGCCCTCTCACTGTGTGTGAACCAGTCGTCAACAGCAGGAGCGTCTGTCCTCTCTGCATTCCAAGGGAACAATGGTGGTTGGTAACCTAGGACACACTGGAATGGAGTTAAACCTGTAGATGAGCTACGTAGAGAGTTCTGAGAGTATTCAGCCCACGGCAGAAAGCGGGACCACTCCCCCTGTTGGTCATGACAGTAATGGCGCAGCAGACGACCTATTTCCTGATTGAGCCTTTCCACTTGTCCATTAGCTTCGGGGTGATGGCCTGACGTGAGACTGACAGTAATCCCCAACTTATCCATAAAAGCTTTCCAAACTGAAGAAGTGAACTGAGGTCCCCGATCGGATACAATGTCCTCCGGTATCCCAAAATTCCTGAAAACGTGAGTGAACAAAGCCTCTGCAGTCTGGAATGCAGTGGGTATAGTGGTGAAAGGCACCAATTTACAGGCCTTAGAAAACCTGTCTATAACTACAAGAATAGTGGTGAATGTTTGTGATGGAGGTAAGTCGGTGAGGAAGTCTATGGACAGATGGGACCAGGGTCTGAGAGGTATGGGTAAAGGCTCTAATTTACCTGCCGGCAGTGATCTGGGAGACTTGGTACGAGCACACAGGGAACAGGACTGAATGTATGCGTGTATTTCCGGCTCCATCCGAGGCCACCAATACCGTTCTCCCAGCAGATGATAGGTGCGGGCTGTGCCTGGATGACCCGTAGCCAGAGAGGTGTGGGCCCATCTTATCAACCTGTCCCTGCATGATTCGGGAACAAACACACGATTAGCTGGACAATTATGAGGAGTGGGTTCTGACCGAGAAGCCTGTCTTATGTCCTCCTCTAAGCATAGTAGTGAGTGGAGCTGCCACCAAACTAAAGTTTCGGATGAACCTTCTGTAGAAGTTGGCAAATCCAAGAAAACGTTGCAAATCTTTTCTACTCACAGGTTTCTTCCATCCAGTTACAGCCTCCACTTTCTTTTCATCCATGTGGACCCCCTCACGATTGATCAGATAACCCAGGAATGAGATGTGGGTCTGGTGGAACTGGCATTTCTCTGCTTTGACGTACAGTCTGTTCTGTAGGAGTCTTTGCAGTACTTGCCTCACCTGTTGAACGTGTTCAGGAAGAGACGCAGAATAGATAAGAATATCATCTAAAAATGCAATGACATATTTACCCAGCATGTCTCTCAGAACTTCATTGATGAATGACTGGAAGACAGAGGGAGCATTTACCAATCCATAGCTCATCACCAGGTATTCATAATGGCCAGAGTTAGTTGAAAAAGCAGTCTTCCATTCATCACCTTCTTTAATTCTAATCAAATTATATGCACTGCGAAGGTCCAATTTTGTGAAATAACGGGCTCCCCTAAGCTGTTCTAAAGCAGCAGGTACCAAAGGCAGTGGATAACGGAACTTTTTTGTGATTTCATTCAAACCACGATAATCCACACACGGTCTTAAACCAccatcttttttttccacaaaaaacataCTTGCGGAGGCAGGAGAAGTAGAGGGTCTAATGAAACCCTGGTTCAGGGCTTCCTGGATGTAATCCTCCATAGCCTGTGTTTCCTTGACTGAAAGAGGATAAATGCGAGCTCGGGGAGGGATTTTTCCTTCTTCCAGTTCAATGGAACAATCCCAGGGTCGATGAGGTGGCAATTCAGAGGCtcttattttactaaaaacatcTAATAGGTCTGAATAGACATCCGGAATGTCAGTGAGACTGGGTTCTAAGGGGCTTTCAATGGAGGTAGATGCCAAGGTcagtttaatacagttttcAAAACAATTGCTGGACCACTGAACAATGTCTCTATCTTCCCAGGAGATTTTAGGGTTATGTTTAAGGAGCCAGGGTAGACCCAAAACAATGGGGTGAGAGGACACTCGGAGGACATGGAAAGAAATCTGTTCACTGTGAACAGATCCAATGGTTATAGTTACGGGTTCAGTGATGTGCGTTACTGTGCCCTCTCCAATGGGTTGATAATTGATGGCTTGAATCCTTAATGGGGTATCTAATTTTATGGCTGGAATCTTCAGTTTCTCGGCCACGGCTTCCTCGATGAAGTTGCCTGCCGCTCCGGAGTCCACGAGGGCTGCAAAGGAAAAGATCTGATTAAGGTAGTGTACAGTTACAGGTACAGTTAACATCTTTATTGAGATGAGAGGATCAGGCATACTCACTGCGTCAGCGCACGAATCGGAACTCGTGCGCTGGGTGGTGTTGCCTGGCCTTGAAAGTGGTCGATTAGGACAGCCACTTCTCATATGACCCCCGTTTCCGCAGTAAAGACACAAACCGCCCTCTATGCGGCGCTGGCGCTCTGCTTGACTGAGCCGCGTGTGTCCCAGTTGCATAGGTTCACCCTCTTCGGCTGAAACTATCTGTGGCAATGCGTGACCACGCTGGGCGCGTGACGTATGACGCCGGCTTTGCAGTAACACATCCAGACGGGTGGCCATCTTGATAAGGTCATTCAAAGACAACGCATCATCCCGGCAAGCTAACTCAGTCTGGATTACTTCGGACAACCCTCTTCGGAACGCCGTGATGAGAGAAGCCTCATTCCAACCGCTTTGCGCGGCTAACGTGCGGAAGGTAAGGGCATAGTCCGCTACTGTGTTACGGCCTTGTCGGAGCTCCAGTAGTTGTTCCCCAACTTCTCTACCCCCCTTTGGGCTGCCAAAAACAGTCCGGAAAGTACTGGCAAACAGTTCATAACTCTCATTCATCGCGGGGTTTTGAGACCAGAGCGCTGTAGCCCACTTTAGGGCTTTACCAGAGAGTAGTGAAGTTACAAACATTATTTTAGCGTTATCGTTGGGACCAGGCGGGGGTTGTTGGGCGAAGTAAATATCGCATTGCAATAAAAATCCCTCACATACCTCTGGGTCTCCGTGGTATTTCTCCGGGAGGGCGACTTTGAGAGGAGTTAATGCAGGTGGCTGGGGTTCTGGTACAGGAGGAGGTTGTGCTGGTGGGTTAACCACCTGCTGGACGGGATTAGCAGGCTGGTTGCTAAACAGAGCCTCCAGACGCTCAGTCAGTGAGTTAAACGCGGTACCCAGTTGATTGAGTTGTTGTTGTACGAGTTCTACAGCTCGTGATTGTTCTGCCACAACCTCATTAAGGTCCCGGTTCCCTGCTGCATCCATTGGCGGCGAGATATTCTGTAAGAAACCAACCAGGAGTTTGGATGCAAATGCAGACAGGTTTATTAGTCCAAAACAGAAGGCAAAAATCGTAGTCAGACAGGCAAGGTTCAAAAGACCAGAAAAGACACGCTAGGCTAGAATCGTAGTCAAGGGGAAGCAGTAGATCAGAAACCAGGGAAACAGTAACATTCAATAACGCTCGATAAGACACAATGTGGCAATATCTCGCAACTAGGCAGTGCATGAGTCCAGTTTATATAGTCTTGTGAATGAGTAATCTCCCACCGGTGTGTGGGAGAGGAGGAGTCAGCCTCAATACTCAGGAGAGGCGGATCTTAAAGGTGTAGTGCGAGCAGGTGTTACaaca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU408110 True 4016 lncRNA 0.48 2 1296245 1300826

Neighbor

gene id symbol gene type direction distance location
rnd2 rnd2,LOC108413538,LOC108273890,LOC107708553,LOC107552458,LOC107754744,LOC107567027 coding upstream 219690 1036346 ~ 1076555 (+)
LOC103035075 NA coding upstream 331806 961281 ~ 964439 (+)
LOC103032830 NA coding upstream 337814 949304 ~ 958431 (+)
atxn7l3 atxn7l3,LOC108276986,LOC107571925 coding upstream 371959 911459 ~ 924286 (+)
ubtf ubtf,LOC102797579,LOC107689086 coding upstream 386089 892095 ~ 910156 (+)
LOC103044572 NA coding downstream 33514 1334340 ~ 1350920 (+)
LOC103028117 crhr1,LOC108413653,LOC107662410,LOC108261365 coding downstream 544154 1844980 ~ 2121494 (+)
LOC111191060 ntn1,LOC107583316,LOC107728387,LOC107672692,LOC107719327,LOC107703884,LOC107563365 coding downstream 1248324 2549150 ~ 2688790 (+)
LOC111191061 NA coding downstream 1373922 2674748 ~ 2678277 (+)
LOC111191042 LOC108432083 coding downstream 1467838 2768664 ~ 2925185 (+)
G296754 NA non-coding upstream 65695 1227395 ~ 1230550 (+)
G296660 NA non-coding upstream 185132 1110288 ~ 1111113 (+)
G296645 vat1,LOC107567018,LOC108413532 non-coding upstream 242676 965442 ~ 1053569 (+)
G296646 tmub2,LOC107708558,LOC107566939,LOC107754824,LOC107660620 non-coding upstream 364649 928770 ~ 931596 (+)
G296640 NA non-coding upstream 376742 848130 ~ 919503 (+)
G296791 NA non-coding downstream 73007 1373833 ~ 1375344 (+)
G296812 NA non-coding downstream 194392 1495218 ~ 1495445 (+)
G296831 NA non-coding downstream 249468 1550294 ~ 1550657 (+)
LOC111191056 NA non-coding downstream 283330 1584156 ~ 1584825 (+)
G296848 NA non-coding downstream 351841 1652667 ~ 1652888 (+)
LOC103044283 LOC103044283,LOC108412482 other upstream 5825 1287516 ~ 1290420 (+)
G296679 tlk2,LOC108413572,LOC107660745 other upstream 95457 1191763 ~ 1200788 (+)
mien1 mien1,sepw2a,LOC107566883 other upstream 462187 826378 ~ 834058 (+)
LOC103026352 ndufa4l,LOC103026352,LOC108413413,LOC108260900,LOC107684646,LOC107590798,LOC103357383,LOC107582867 other upstream 1255354 36833 ~ 40891 (+)
G296790 tcap,LOC108413611 other downstream 58286 1359112 ~ 1361935 (+)
LOC111191028 grb2b,grb2,LOC108432081,LOC107719324,LOC108256494,LOC107672691,LOC107672145,LOC107723603 other downstream 1741606 3042432 ~ 3148603 (+)
LOC103030733 NA other downstream 2249501 3550327 ~ 3640614 (+)
LOC103041102 LOC108440983,LOC108258030,LOC107718582,LOC107661664,LOC107715658,LOC107695723,LOC107550253 other downstream 2952190 4253016 ~ 4299447 (+)
znf653 znf653,LOC106601361,LOC107553636,LOC104961106,LOC103393609 other downstream 3119171 4419997 ~ 4434071 (+)

Expression


Co-expression Network