G296790 (tcap,LOC108413611)


Basic Information

Item Value
gene id G296790
gene name tcap,LOC108413611
gene type unknown
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NW_019172828.1
NCBI id APWO02000046.1
chromosome length 5964967
location 1359112 ~ 1361935 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU408143
tttttatgtcatttatttattgaaacaaTACATTGGACATCttacaaacaagaaaaaagaccACTATGATCTATGAGGAAAAAACAACTGCATGTGAAGCAACAGTTGACAAATAGTgcaatttcattcatttataagtcgtaacaaaataaaatatatttacctaAACATTGTAAACATGCTTATTGTCGCTTTTTTCATTGCATAAACTGCAGGACTGCttacaaaatacacataaacCTGACTGTCTCTGCTTCTGTCCCTCTGTTTTCTTCTGTATCTTTCCTTCTTGATTTCTGACTGATTTCCTCCAAGTAGGCATCAGTACCTCAAAGGATCTTGCCTGCCAACCTTCAAGTCCAGAACTTGCTCTGTCTGCTTCATTTCTTCTGTCTAGTTTTGTACGATTTGTGCCAATGGTGTCCAGCCGAAAACATGCTCAACTCCTTCCTCTAAAGTTTAACTTGctttactttaattatacaGGTCTATTTAATTAATCAGATACTATTTACAGCTCATATCTTCTTTACAAACCTCTTGCATCGTCATCAGCAACATCAGTCTCTGCAGTTTCTCAAGCAGGGCGAGGGCAGTAACAAAGAAGGCTTTAAAACGTCTATTGTGTACATTTTCTACCTATATCTGCAAGGTTAGCCCCCTTTTCTCAGTGCCCTTCCACAGTTCAACAAAGTCCAAACATTCTTCGACTCAGCTTCCCCTCCATCccctcttgctctctttctcttcaccCCCTCTGGGCCTCCTGAGACATGGACCTGCCCAGGGTTCTGGCCGATTTGGCGAACTCCATGTGGGTTGGTTTGACGGGTGGCAGGTCTCTGGTGATCTCCTGGATGTCCCTCTTGTTTGGGCACTCTCCGTTGGGTGTGCGGGCAGGGATGAAGTCCTCGGGGGTGTGTGGAGTGCCGCGACCCAGTCGGATGCCGAGGTCCACTGGTTTGAAGACTGGCAGGGGGAGGGTGTTTCTTTTGGGAAGCAGCTGGTGCTCCCGAACGCCAGACTCCAGAGTTCCCACTCTTCGCACTCCCGATGGACAGGACTGGGTGAGGGGGCGAGCTTGCCAGTAACGAGACATGGTCTCCCGTCGTGAATCGTCGGACATTGCCATGGATTGgCGATCCTCGTGCTGTGTTTTCATGTTGATGCTGTGCCAGTCAGCGGTGTAGCTCTCTCTCTTGGCAGCGTTCTCCTCCCTCACACTGCAGCTCAGCTCGGCTCCCACCACGCAGCCGCCACGCTtctgtgtcttgtcttgttacTTAAGGGTTAACTGTAATTGTAGAGGATCTACAATGATCGTCTCTTAAAGAGGATCTTCACTGGTTCTGTTCTTCTTCTGCTAAGAAGATAGATCTCAATTTGTTCTTCACCTGGTTCTTCAACTGCTTGCCCCctgagcagtgtgtgtatgcTGTCTGActgagcgagtgtgtgtatcTGCCTTTTATACTGTCTCT

Function

symbol description
tcap Predicted to enable protein-macromolecule adaptor activity; titin Z domain binding activity; and titin binding activity. Predicted to be a structural constituent of muscle. Acts upstream of or within T-tubule organization and heart contraction. Located in Z disc. Is expressed in heart; myotome; and skeletal muscle. Human ortholog(s) of this gene implicated in autosomal recessive limb-girdle muscular dystrophy type 2G and hypertrophic cardiomyopathy 25. Orthologous to human TCAP (titin-cap).

NR:

description
telethonin

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU408143 True 1481 TUCP 0.46 3 1359112 1361935

Neighbor

gene id symbol gene type direction distance location
LOC103044572 NA coding upstream 8192 1334340 ~ 1350920 (+)
rnd2 rnd2,LOC108413538,LOC108273890,LOC107708553,LOC107552458,LOC107754744,LOC107567027 coding upstream 282557 1036346 ~ 1076555 (+)
LOC103035075 NA coding upstream 394673 961281 ~ 964439 (+)
LOC103032830 NA coding upstream 400681 949304 ~ 958431 (+)
atxn7l3 atxn7l3,LOC108276986,LOC107571925 coding upstream 434826 911459 ~ 924286 (+)
LOC103028117 crhr1,LOC108413653,LOC107662410,LOC108261365 coding downstream 483045 1844980 ~ 2121494 (+)
LOC111191060 ntn1,LOC107583316,LOC107728387,LOC107672692,LOC107719327,LOC107703884,LOC107563365 coding downstream 1187215 2549150 ~ 2688790 (+)
LOC111191061 NA coding downstream 1312813 2674748 ~ 2678277 (+)
LOC111191042 LOC108432083 coding downstream 1406729 2768664 ~ 2925185 (+)
LOC103026062 LOC108432079 coding downstream 1803114 3165049 ~ 3216189 (+)
G296768 NA non-coding upstream 58286 1296245 ~ 1300826 (+)
G296754 NA non-coding upstream 128562 1227395 ~ 1230550 (+)
G296660 NA non-coding upstream 247999 1110288 ~ 1111113 (+)
G296645 vat1,LOC107567018,LOC108413532 non-coding upstream 305543 965442 ~ 1053569 (+)
G296646 tmub2,LOC107708558,LOC107566939,LOC107754824,LOC107660620 non-coding upstream 427516 928770 ~ 931596 (+)
G296791 NA non-coding downstream 11898 1373833 ~ 1375344 (+)
G296812 NA non-coding downstream 133283 1495218 ~ 1495445 (+)
G296831 NA non-coding downstream 188359 1550294 ~ 1550657 (+)
LOC111191056 NA non-coding downstream 222221 1584156 ~ 1584825 (+)
G296848 NA non-coding downstream 290732 1652667 ~ 1652888 (+)
LOC103044283 LOC103044283,LOC108412482 other upstream 68692 1287516 ~ 1290420 (+)
G296679 tlk2,LOC108413572,LOC107660745 other upstream 158324 1191763 ~ 1200788 (+)
mien1 mien1,sepw2a,LOC107566883 other upstream 525054 826378 ~ 834058 (+)
LOC103026352 ndufa4l,LOC103026352,LOC108413413,LOC108260900,LOC107684646,LOC107590798,LOC103357383,LOC107582867 other upstream 1318221 36833 ~ 40891 (+)
LOC111191028 grb2b,grb2,LOC108432081,LOC107719324,LOC108256494,LOC107672691,LOC107672145,LOC107723603 other downstream 1680497 3042432 ~ 3148603 (+)
LOC103030733 NA other downstream 2188392 3550327 ~ 3640614 (+)
LOC103041102 LOC108440983,LOC108258030,LOC107718582,LOC107661664,LOC107715658,LOC107695723,LOC107550253 other downstream 2891081 4253016 ~ 4299447 (+)
znf653 znf653,LOC106601361,LOC107553636,LOC104961106,LOC103393609 other downstream 3058062 4419997 ~ 4434071 (+)
LOC111191039 NA other downstream 3288708 4650643 ~ 4675621 (+)

Expression


Co-expression Network