G296863


Basic Information

Item Value
gene id G296863
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NW_019172828.1
NCBI id APWO02000046.1
chromosome length 5964967
location 1700933 ~ 1701170 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU408239
caggagtaaagcagcataaagttatccaaaagcagtgtgtaagactggtggaggagaacatgatgccaagatgcataaaaaaaaaactataattaaaaaccagggttattccacagatattgatttctgaactcttgaaacttgaatgaatatgaacttgttttctttgcattatttgaggtctgaaagctctacatctttttgttatttcagccatttctcattttcttctaaTAAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU408239 True 238 lncRNA 0.32 1 1700933 1701170

Neighbor

gene id symbol gene type direction distance location
LOC103044572 NA coding upstream 350013 1334340 ~ 1350920 (+)
rnd2 rnd2,LOC108413538,LOC108273890,LOC107708553,LOC107552458,LOC107754744,LOC107567027 coding upstream 624378 1036346 ~ 1076555 (+)
LOC103035075 NA coding upstream 736494 961281 ~ 964439 (+)
LOC103032830 NA coding upstream 742502 949304 ~ 958431 (+)
atxn7l3 atxn7l3,LOC108276986,LOC107571925 coding upstream 776647 911459 ~ 924286 (+)
LOC103028117 crhr1,LOC108413653,LOC107662410,LOC108261365 coding downstream 143810 1844980 ~ 2121494 (+)
LOC111191060 ntn1,LOC107583316,LOC107728387,LOC107672692,LOC107719327,LOC107703884,LOC107563365 coding downstream 847980 2549150 ~ 2688790 (+)
LOC111191061 NA coding downstream 973578 2674748 ~ 2678277 (+)
LOC111191042 LOC108432083 coding downstream 1067494 2768664 ~ 2925185 (+)
LOC103026062 LOC108432079 coding downstream 1463879 3165049 ~ 3216189 (+)
G296862 NA non-coding upstream 3177 1697554 ~ 1697756 (+)
G296848 NA non-coding upstream 48045 1652667 ~ 1652888 (+)
LOC111191056 NA non-coding upstream 116108 1584156 ~ 1584825 (+)
G296831 NA non-coding upstream 150276 1550294 ~ 1550657 (+)
G296812 NA non-coding upstream 205488 1495218 ~ 1495445 (+)
G296864 NA non-coding downstream 7488 1708658 ~ 1709017 (+)
G296866 NA non-coding downstream 24272 1725442 ~ 1725652 (+)
G296871 NA non-coding downstream 36033 1737203 ~ 1737762 (+)
G296873 NA non-coding downstream 46879 1748049 ~ 1748291 (+)
G296882 LOC106605384,LOC106604997 non-coding downstream 136849 1838019 ~ 1838682 (+)
G296790 tcap,LOC108413611 other upstream 338998 1359112 ~ 1361935 (+)
LOC103044283 LOC103044283,LOC108412482 other upstream 410513 1287516 ~ 1290420 (+)
G296679 tlk2,LOC108413572,LOC107660745 other upstream 500145 1191763 ~ 1200788 (+)
mien1 mien1,sepw2a,LOC107566883 other upstream 866875 826378 ~ 834058 (+)
LOC103026352 ndufa4l,LOC103026352,LOC108413413,LOC108260900,LOC107684646,LOC107590798,LOC103357383,LOC107582867 other upstream 1660042 36833 ~ 40891 (+)
LOC111191028 grb2b,grb2,LOC108432081,LOC107719324,LOC108256494,LOC107672691,LOC107672145,LOC107723603 other downstream 1341262 3042432 ~ 3148603 (+)
LOC103030733 NA other downstream 1849157 3550327 ~ 3640614 (+)
LOC103041102 LOC108440983,LOC108258030,LOC107718582,LOC107661664,LOC107715658,LOC107695723,LOC107550253 other downstream 2551846 4253016 ~ 4299447 (+)
znf653 znf653,LOC106601361,LOC107553636,LOC104961106,LOC103393609 other downstream 2718827 4419997 ~ 4434071 (+)
LOC111191039 NA other downstream 2949473 4650643 ~ 4675621 (+)

Expression


Co-expression Network