G296882 (LOC106605384,LOC106604997)


Basic Information

Item Value
gene id G296882
gene name LOC106605384,LOC106604997
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NW_019172828.1
NCBI id APWO02000046.1
chromosome length 5964967
location 1838019 ~ 1838682 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU408258
acattttacatttatggtatttagcagacgcccttatccagagcgacttacaacagtgcttcaaagttacttaagatatccaaagctagtttgtagactaggatcaagagatacatagaacttaatcatgttaagaaccctaggaacctttttttttattagtttaggaactctttgaaaagatgtgtcttcagtcgacgtttgaagaccgtgagtgactctgctgttctgacatccagtggaagttcattccaccaccttggtgccagcacagagaagagtctggatgtctgttttctgtgtgttttgagggatggaggttcgagccgagccgtactggaagctctaagagctcttggtgcagatctggctttgaccatcgccatcaggtatgaaggtgctggtccgttttttgccttgtaggcagcgtcagggttttgaatcggatgcgggcggcaacaggaagccagtggagggaacgcatcaaaggagtcacatgactgaacttcggaagattgaagacgagtcgtgctgccgcgttctgaattaactgtagtggtttgatggctcgcagtggaagaccagccagtagagagttgcagtagtcaagtcttgagatgacaagagactgcacaagcacctga

Function

NR:

description
PREDICTED: uncharacterized protein LOC106605384, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU408258 True 644 lncRNA 0.46 2 1838019 1838682

Neighbor

gene id symbol gene type direction distance location
LOC103044572 NA coding upstream 487099 1334340 ~ 1350920 (+)
rnd2 rnd2,LOC108413538,LOC108273890,LOC107708553,LOC107552458,LOC107754744,LOC107567027 coding upstream 761464 1036346 ~ 1076555 (+)
LOC103035075 NA coding upstream 873580 961281 ~ 964439 (+)
LOC103032830 NA coding upstream 879588 949304 ~ 958431 (+)
atxn7l3 atxn7l3,LOC108276986,LOC107571925 coding upstream 913733 911459 ~ 924286 (+)
LOC103028117 crhr1,LOC108413653,LOC107662410,LOC108261365 coding downstream 6298 1844980 ~ 2121494 (+)
LOC111191060 ntn1,LOC107583316,LOC107728387,LOC107672692,LOC107719327,LOC107703884,LOC107563365 coding downstream 710468 2549150 ~ 2688790 (+)
LOC111191061 NA coding downstream 836066 2674748 ~ 2678277 (+)
LOC111191042 LOC108432083 coding downstream 929982 2768664 ~ 2925185 (+)
LOC103026062 LOC108432079 coding downstream 1326367 3165049 ~ 3216189 (+)
G296873 NA non-coding upstream 89728 1748049 ~ 1748291 (+)
G296871 NA non-coding upstream 100257 1737203 ~ 1737762 (+)
G296866 NA non-coding upstream 112367 1725442 ~ 1725652 (+)
G296864 NA non-coding upstream 129002 1708658 ~ 1709017 (+)
G296863 NA non-coding upstream 136849 1700933 ~ 1701170 (+)
G296907 NA non-coding downstream 72007 1910689 ~ 1935995 (+)
G296912 NA non-coding downstream 94601 1933283 ~ 1933732 (+)
G296918 NA non-coding downstream 135704 1974386 ~ 1975786 (+)
G296923 NA non-coding downstream 153134 1991816 ~ 1992271 (+)
G296892 NA non-coding downstream 286015 2124697 ~ 2129792 (+)
G296790 tcap,LOC108413611 other upstream 476084 1359112 ~ 1361935 (+)
LOC103044283 LOC103044283,LOC108412482 other upstream 547599 1287516 ~ 1290420 (+)
G296679 tlk2,LOC108413572,LOC107660745 other upstream 637231 1191763 ~ 1200788 (+)
mien1 mien1,sepw2a,LOC107566883 other upstream 1003961 826378 ~ 834058 (+)
LOC103026352 ndufa4l,LOC103026352,LOC108413413,LOC108260900,LOC107684646,LOC107590798,LOC103357383,LOC107582867 other upstream 1797128 36833 ~ 40891 (+)
LOC111191028 grb2b,grb2,LOC108432081,LOC107719324,LOC108256494,LOC107672691,LOC107672145,LOC107723603 other downstream 1203750 3042432 ~ 3148603 (+)
LOC103030733 NA other downstream 1711645 3550327 ~ 3640614 (+)
LOC103041102 LOC108440983,LOC108258030,LOC107718582,LOC107661664,LOC107715658,LOC107695723,LOC107550253 other downstream 2414334 4253016 ~ 4299447 (+)
znf653 znf653,LOC106601361,LOC107553636,LOC104961106,LOC103393609 other downstream 2581315 4419997 ~ 4434071 (+)
LOC111191039 NA other downstream 2811961 4650643 ~ 4675621 (+)

Expression


Co-expression Network