G296892


Basic Information

Item Value
gene id G296892
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NW_019172828.1
NCBI id APWO02000046.1
chromosome length 5964967
location 2124697 ~ 2129792 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU408272
GAAAAGAATATCAGAATAATAGATTCCAAACAATGGTGCATTTGTTGATGCAATTAATGTTTCCgacaaacattttaatttcatttcatcAATAGTTATGACAATTTTTTTagtgaacaaataaaaacattctttaCTAAGGATTCCCGGACAATTCTGCAACCAAATTGTTTTGCTTGGAAAAAGATATGCTTAGAAATTCACTTTTGAACAAGTGATGAAAAGATCCTGTAAACTGATCCCGAAAAAGCCATTGCTCCAAAGACCAACTGAACCACCTCTAGTGTTAAGAGTGCGCTGAAATAGGCTTACTTTGCTGTGAACGTGCGATCACTCATTGGTTAAACCTGTTACACATGAATGTATTACATATAAAACAAGTAGTTGAGCTGTTAAGCATTTAAGCAGTGCTTAAATGCCAGGCATATCTGTGCGACTCGTCTGTGAACAAATAGGTTATTAGAGTATCGTAGTCCTTAGAGTCATGTGTCCTGTTATAACATACAACCAACATGTCTATTAAAGCAAACAAAGCAAATGAAGGATCTTCTGCCACTTATTAAACCCTTGATAGGTTTATGCTTGGTGTAGAAAGACCAATACCACTACCACTACAACAAGTTGGAGCTCAGATGATGGTCTAGAGTATCCCAGGAATGTCCAGCCCCTTTGGTGCTGGAGATCCACCATTCTGGAGAATTCAAATCTATCATACTTGGTGATATCTGATGTTTAGATGGCCTTGAAGGCGTTTGGTACACTTAAAGTCAAAAGacttttaagttgcacccagaagaaatAAATTGAATTCAACAGTCCTGGGATTGTGGTGTTGAATTGGGCAATTTCGTACGATACctgatcacctttggtcttcgtTACAGGCAGACTATTTAcgttgtagattctcactgaacgcatcaaaactatgaatgaacacatgtggagttttatgtacttaacaagaaatgagctgtcctccacagtcaccggacctgaacccaatccagatggtttggggtgagctggaccagagaatgaagaaggcaaaggagcaacaagtgctaataaacacctctgggaactccttccttcaaaacCATTTTGAATGTTGGAAAACCAtctcaggtggccacctcttgaagctcattgagagaatgatgccaagagtgtgcaaagcagtaatcagagcaaagggtggctattttgaagaaactagaatataaaacatgttttttagtttttcaccttttttttgttaagtacataaaactccacatgtgttcattcatagttttgattccttcagtgagaatctacaatgtaaatagtcatgaaaataaaaaagaaacgcATTGaagaagagaaggtgtgtccaaacttttggcctgtactgtaaaaaAGGGTCCTGTTAGctagcaggacaatgctcatccacaGATCTATCCTGTCCCCAGAAGACCCTAGAAAATACATTCATCTCGAGCCTGCCTGTCTCTGAATGGTTGGACGAAGAGGaaatatatatagtgatgtTCTTTCGGTGCTTTCGTGGCCACTGTCCCGTTTCATTGGCGCGCAGCTCGTTGACAACAAGCCCAGCAGTATTTTGACACGCGCTGCACGGACTCTCCACTTTCCGGAGGGGAATCAAGAGTTGGTATTTGACAGATCAGGGCAGGAGAAACCGAAAAGAGCAGAATCAGTCCATCAAAAAGTGTTCAAACCGGCACCGAGAAGCTGGGCGAAGTTTTCCACTTGAACAAAGATGTTGGAAGGGATGGGAACTGACTGGACTGTACTCTAAACCTGATATCCGCAGCAGAACCTTATCCTACTCAAGCTGATCTTCCCCAGAAGCACTGTAAAATGGTAgggaatgttttgtttttttctacgcTTGGTTTCAAATAGAGCTATGATAGAGCTATGATACTCTTGGGAAACAAGCCCCAGGCTGGGGTCACCAAAACAAGGCTGGCCCATTTGTCTCATTAAGCGATGGGTCCgagcatattttatttttccccttAAAAAAGTGATGCAAGCAGTGATGGATTTACCAATGGAATCTGTTTGGAATTAGCAGAGAAGTTGTATAGAGGAATAATTTGAGTTCATAGGACCATCATTGAAGGAATCAGCACATGACAGGAataaaacttggtgggtagttgtgCCACACTGTCATGTTCTGAGTGACTCAGAATGTCTACTCAAGAGTCATCCTCAGTGATGAGTCCCACTTTTGTCTTGGTAAAGATAGATGATCAACAAATCTGTATGGTGGAAGCACCCTTGGTCTTCAATACAAGCACTTATTgaagtcctgcaaccagtggccctaccttttctgaactCACATTCTGgtgcttttttttcagcaggaagatgctcatccacatactgctgccatctggGGTCACAAAAGCAAGGCTGGCCCATTTGTCTCCAAGCATTGGTCCAAGCATTGTCAAGTATTTGACTTTGACAGCCATTGGGTCCTTTTTCAGTCCGTTGAACCAAACTGTTGACTTCCTGTCTGTGGATCATGTTAAAACATTAGGTGCAAAATAATTTGCGTCCACCTTAAAAAAAGTCATGCTAGTAGTAAATTGTGAGGGATAGAAGGTGATATCGGTAAAATTAATGAGGGATAGAAATCTAGTAATCTGCTTGTCATTAGTAGAGAAGTTGTATAGAGACTATTTGAGTTCAGAGAATCAACACAGAAGGAATCAACACATggcaggaatgaaacttggtaggtagataggtgtGCCAAACTGTGTGTCATGGAGATGATCAATGAATAATATCTATTGCTCTTCAATACAGGCATTTTGATAGCCCAATGTATGTTACGTTATTGCAGCCCTGAACCAGTGGCTGTACCTTTTCTGAACCTTCTTGTGTTCTGGTGCACCATTTCAACAGGACTTGTCAactaatgctcatccacattcTGCTGTTGTTCCATCTCAAGAGCTTACCTTGAAGACAGAAATTCTGCaggtgtagctcaataaatatgaccaagagttgCCTTACAATCCAACACTTTCTTCTTTTTGACGATGAGTGTAGGGTAAATGACCTCTGCATGTGATATAAGTGGTTCTATTTCCCTTTTTGTAATCAGGGAGCACAACACCTTATGTGATTGTGGTTTTGGTTATTCTGTAAATGCAAATCTTTGAATTTTTTGCATTGGAAATAAATTGCCTTTCCTCCAAAGTCCCATCCGTTAAAGGGCGGGAATGCCGTCATATCAAATTagttttattgtgtgtgttcGCAGCTTTTTATTATCTCCGGAATGGCTTGTCAAATGTGACCCAAATTCctggcaaaacaaaaacatgagaATTTATGGGTAAAACAGGATCGGTGTGTTTGCTGGCTGGCTGCGCAAACCAAGGATTAATCGGAAATTTTCCAATTGAAGAGGAAAACTCATCAGGCACAGCTGTGCCAGTGGAGACCTCAGCAGGTTCTCATGAAAAGAtggataaaaaaagagaaagagaaagagagagagcgagagagatggatagagagagagagagataagtgGGGAAAGCTGCAGATACTCAAGCTTTTGTTGGTCTGTCAAATGAAGCTGTTTGCCAGCGAATGTGAAAGTGGCTAGAGGGCATGTGAGGAGGGTTTGATTCAGCATCACGAGCTGGAGCCTCACAAAGCAAGGCTCtcatccttttctctctctctctctctctttctctctctctcctcgatTCACTTCGTCAGACTTTGCTCTTTATTTATAGCACTTTAATGGAAAGCGGTTCAGATGGCCGCGGCGTTTCGTAAAGGACTGGCAGGATGCCAGTGATTAAAAAGGCTGCGTGGTCTTAATCAAAGACATTAACCTTCTGAGAGTCTAAATTTGATATTAGCGTGACTATATATCACCTCCAACCAGGAGCACTGCAGCCCTACTGGTGCTCTTGCTCACATTATAACCAGAGCCACTTTTCTAATGACCAAAAAAATCCACGTAGAGtattcataaattaaattaaattaaattaagttcaGTGTAGTGTAGAAGTTTTGTCCAACAGCGCTACCagagtgttagcatgctggcaaCCAGCCTTGTTCAACAGtgctaccacagtgttagcatgctggctacctgCCTCCTCCCACATTGCTACCGGTCTCATCCAACATAGCTACTGTGGTATTAGCAAGCTGGCTACCAGCCTAGCATGGAATTTTAGCAAGGTTCAGCTAGCCAGTCAGTGGATCCCAACATCATTAATACCGCCTACCAACAGATCGAAATAGCCTCTAAACCCCGTAACATTTTTTGAAAGTTACAGAAATTAATGGTAAGCATACTGGCTTccagcctcgtccaacatcgCTAACATGGCATTAGCACATTGGCTATCAGCCACATCCTAGATCTTTATTATGCCCTTATCCAACATCGCTACCACAGTGTTTGCATGCTGGCTACCGGCCTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU408272 True 4499 lncRNA 0.41 3 2124697 2129792

Neighbor

gene id symbol gene type direction distance location
LOC103028117 crhr1,LOC108413653,LOC107662410,LOC108261365 coding upstream 3203 1844980 ~ 2121494 (+)
LOC103044572 NA coding upstream 773777 1334340 ~ 1350920 (+)
rnd2 rnd2,LOC108413538,LOC108273890,LOC107708553,LOC107552458,LOC107754744,LOC107567027 coding upstream 1048142 1036346 ~ 1076555 (+)
LOC103035075 NA coding upstream 1160258 961281 ~ 964439 (+)
LOC103032830 NA coding upstream 1166266 949304 ~ 958431 (+)
LOC111191060 ntn1,LOC107583316,LOC107728387,LOC107672692,LOC107719327,LOC107703884,LOC107563365 coding downstream 419358 2549150 ~ 2688790 (+)
LOC111191061 NA coding downstream 544956 2674748 ~ 2678277 (+)
LOC111191042 LOC108432083 coding downstream 638872 2768664 ~ 2925185 (+)
LOC103026062 LOC108432079 coding downstream 1035257 3165049 ~ 3216189 (+)
LOC103025752 kpna2,LOC108432045,LOC108261381 coding downstream 1090137 3219929 ~ 3227171 (+)
G296923 NA non-coding upstream 132426 1991816 ~ 1992271 (+)
G296918 NA non-coding upstream 148911 1974386 ~ 1975786 (+)
G296907 NA non-coding upstream 188702 1910689 ~ 1935995 (+)
G296912 NA non-coding upstream 190965 1933283 ~ 1933732 (+)
G296882 LOC106605384,LOC106604997 non-coding upstream 286015 1838019 ~ 1838682 (+)
G296943 NA non-coding downstream 8921 2138713 ~ 2138919 (+)
G296944 NA non-coding downstream 21669 2151461 ~ 2152039 (+)
G296977 NA non-coding downstream 70374 2200166 ~ 2200402 (+)
G296984 NA non-coding downstream 90387 2220179 ~ 2221329 (+)
G296985 NA non-coding downstream 97857 2227649 ~ 2228204 (+)
G296790 tcap,LOC108413611 other upstream 762762 1359112 ~ 1361935 (+)
LOC103044283 LOC103044283,LOC108412482 other upstream 834277 1287516 ~ 1290420 (+)
G296679 tlk2,LOC108413572,LOC107660745 other upstream 923909 1191763 ~ 1200788 (+)
mien1 mien1,sepw2a,LOC107566883 other upstream 1290639 826378 ~ 834058 (+)
LOC103026352 ndufa4l,LOC103026352,LOC108413413,LOC108260900,LOC107684646,LOC107590798,LOC103357383,LOC107582867 other upstream 2083806 36833 ~ 40891 (+)
LOC111191028 grb2b,grb2,LOC108432081,LOC107719324,LOC108256494,LOC107672691,LOC107672145,LOC107723603 other downstream 912640 3042432 ~ 3148603 (+)
LOC103030733 NA other downstream 1420535 3550327 ~ 3640614 (+)
LOC103041102 LOC108440983,LOC108258030,LOC107718582,LOC107661664,LOC107715658,LOC107695723,LOC107550253 other downstream 2123224 4253016 ~ 4299447 (+)
znf653 znf653,LOC106601361,LOC107553636,LOC104961106,LOC103393609 other downstream 2290205 4419997 ~ 4434071 (+)
LOC111191039 NA other downstream 2520851 4650643 ~ 4675621 (+)

Expression


Co-expression Network