LOC111191047


Basic Information

Item Value
gene id LOC111191047
gene name NA
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NW_019172828.1
NCBI id APWO02000046.1
chromosome length 5964967
location 1845913 ~ 1857822 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU408330
TTCTATGTTTACAACAGGTTGGGACTAATATGGTGGAATTCCTGTCCGAGGCACAAGGCACAAGACCTTACCCGTTTGTTTTGGCTCTAGGTGATGATCAGCGTTGCTCACAATCATTTGTGGTCATCAATGGGGAGGCCATGGAGCAGAGTACACTTATTGGAGCTGTTGATGTTTGTTTTAAAGCATACTATGTCTTTGACATAAACTACCCCAGACAGTGTTCTTCAGTGTGGGAGTTTTTACAGACTGTCGTCTATGAACTGCCAGGTCAGGAATCTCCCTCTGTAAGACTTTTGCGggcatttattttttccacccaGTAGTGAAGCTCGTTTGCAGCTCCTTTGTATATTATacatgtttgtaaaaaaaaaatgttgttactgagatgtttttgttgatgtaaaatagaGAACGGTTGTTGTTAATTAGAAATGTTTATGAAATGAAGAATAGTTGATGATGAGAAATGTTGATGAAATGGAGAATGGTTGATGTTAATATATGTTGATGAGAAATGATGAAATGTTGATGAAACGGAGAATGGTTGTTGGTGAGAAATAATGTTGAAATGATGTTAATGAAATGGTTATTGAGATGTTGTTGAGAAGAAATGGTGTTATGGTTTTGAGAAATTACTTTGttgaaaaattacaaaaacaataaagcaTTTTATTGTTAA
>XM_022665063.1
CACGTCCCGTCCTGCCCCTCCCTGCCCCTCCCCGCCACGCCCTGGACACCCGCCACACCATTTCCCTCCCGCTGAAAGAGGAAAAGTACTCAGCCGAAAgaaataattctgttctgtttcaTGGATACATTTGTGAAGGAGAAACTGAAAGAGTGGAAACTGGACTCTCTGATTCCCAGGTTTGAGCTTGAAGAAATCGACAAGGAGAGTTTTATATTACTGGATGATGCTTCCATTGCGGCGCTAGTTCCAGTAATTGGACCCAGACTGAAACTGAGGTCACACCTCAGAAAACTAACCGAGtttattcagtCTTCAAAGGATCCTCAGCATGAGCTGGTTGAGTATGGCCCTACAGCAGGACCATCAATGGACCAGCAGCATGAGGCCATGTCTTCAGGACAAGGAGAattgtttAAAATTAGGGAGGCCCTCAACAAAACACCAGATGGTAGAGACATAGTGTGCAGTCTTGACACAGAACAGTGCCTCTCGCTTAAGCAGCGGAGGGCTATGGTTCGAATCCTAGTGTCATATCTCATCGAGCGGTTTGGAGAGACTCCATCATcggaaacaaagaaaaacatggccTCTTCTTTGGTGACTGAATTTCCATGTCTAAAAGATCAGCATGGGAATGGCAATgaagcATGGTATAGTCCAGGTCGAAACCACAGACCAGCAACTGGCTTCATTGAAGAACGTTTAAGAAATGTACGGAAGAGGCTCCGTAGTGGAACGAGCAGACCTAGCCATGTGGAGAACAACGTAATCAGTAGTTTGGTTTTGCCAGagaCTGAAATATCTGATGAGAGGGCAGAGGCAATGATGGAGTGGCTAAAAAATAACATCAGACCCCTAAGCCAAGTTGAAGAATACATGAAGCAGACAGCCATCCATAGAGCTAAGTGGATAAGGGAGCATGGGTCAAAGACCATGGAAGAGATCAAGAGAGAGTATCCACGTCTGCTGGATACACCAGGAATGatTGCTCAGGACTTTTCCATTTTACACCCAGCCTGTGCCGGGAAACTTGCAGAAAAGTGGATGCCTGTTTTCAAAGACAAAATTTTACGATTTGCTAGCCAGGAGAAGCAAGCTTCTGGAATTATTTCCAAAGTGGATTCTGTGTGTACAGATGCACAAGGTGATATGGCTTTGAAATTATTGCCAGTAATCCTTCCAGCTTCTGTCTATAGGATTGGTCGGAAGAGCTTCCGTCCAAGCtgtgaagaaacaaaaaaatcatttattgatCTGCAACCAGTTGGGACTAATATGGTGGAATTCCTGTCCGAGGCACAAGGCACAAGACCTTACCCGTTTGTTTTGGCTCTAGGTGATGATCAGCGTTGCTCACAATCATTTGTGGTCATCAATGGGGAGGCCATGGAGCAGAGTACACTTATTGGAGCTGTTGATGTTTGTTTTAAAGCATACTATGTCTTTGACATAAACTACCCCAGACAGTGTTCTTCAGTGTGGGAGTTTTTACAGACTGTCGTCTATGAACTGCCAGGTCAGGAATCTCCCTCTGTAAGACTTTTGCGggcatttattttttccacccaGTAGTGAAGCTCGTTTGCAGCTCCTTTGTATATTATacatgtttgtaaaaaaaaaatgttgttactgagatgtttttgttgatgtaaaatagaGAACGGTTGTTGTTAATTAGAAATGTTTATGAAATGAAGAATAGTTGATGATGAGAAATGTTGATGAAATGGAGAATGGTTGATGTTAATATATGTTGATGAGAAATGATGAAATGTTGATGAAACGGAGAATGGTTGTTGGTGAGAAATAATGTTGAAATGATGTTAATGAAATGGTTATTGAGATGTTGTTGAGAAGAAATGGTGTTATGGTTTTGAGAAATTACTTTGttgaaaaattacaaaaacaataaagcaTTTTATTGTTAA
>XM_022665064.1
CACGTCCCGTCCTGCCCCTCCCTGCCCCTCCCCGCCACGCCCTGGACACCCGCCACACCATTTCCCTCCCGCTGAAAGAGGAAAAGTACTCAGCCGAAAgaaataattctgttctgtttcaTGGATACATTTGTGAAGGAGAAACTGAAAGAGTGGAAACTGGACTCTCTGATTCCCAGGTTTGAGCTTGAAGAAATCGACAAGGAGAGTTTTATATTACTGGATGATGCTTCCATTGCGGCGCTAGTTCCAGTAATTGGACCCAGACTGAAACTGAGGTCACACCTCAGAAAACTAACCGAGtCTTCAAAGGATCCTCAGCATGAGCTGGTTGAGTATGGCCCTACAGCAGGACCATCAATGGACCAGCAGCATGAGGCCATGTCTTCAGGACAAGGAGAattgtttAAAATTAGGGAGGCCCTCAACAAAACACCAGATGGTAGAGACATAGTGTGCAGTCTTGACACAGAACAGTGCCTCTCGCTTAAGCAGCGGAGGGCTATGGTTCGAATCCTAGTGTCATATCTCATCGAGCGGTTTGGAGAGACTCCATCATcggaaacaaagaaaaacatggccTCTTCTTTGGTGACTGAATTTCCATGTCTAAAAGATCAGCATGGGAATGGCAATgaagcATGGTATAGTCCAGGTCGAAACCACAGACCAGCAACTGGCTTCATTGAAGAACGTTTAAGAAATGTACGGAAGAGGCTCCGTAGTGGAACGAGCAGACCTAGCCATGTGGAGAACAACGTAATCAGTAGTTTGGTTTTGCCAGagaCTGAAATATCTGATGAGAGGGCAGAGGCAATGATGGAGTGGCTAAAAAATAACATCAGACCCCTAAGCCAAGTTGAAGAATACATGAAGCAGACAGCCATCCATAGAGCTAAGTGGATAAGGGAGCATGGGTCAAAGACCATGGAAGAGATCAAGAGAGAGTATCCACGTCTGCTGGATACACCAGGAATGatTGCTCAGGACTTTTCCATTTTACACCCAGCCTGTGCCGGGAAACTTGCAGAAAAGTGGATGCCTGTTTTCAAAGACAAAATTTTACGATTTGCTAGCCAGGAGAAGCAAGCTTCTGGAATTATTTCCAAAGTGGATTCTGTGTGTACAGATGCACAAGGTGATATGGCTTTGAAATTATTGCCAGTAATCCTTCCAGCTTCTGTCTATAGGATTGGTCGGAAGAGCTTCCGTCCAAGCtgtgaagaaacaaaaaaatcatttattgatCTGCAACCAGTTGGGACTAATATGGTGGAATTCCTGTCCGAGGCACAAGGCACAAGACCTTACCCGTTTGTTTTGGCTCTAGGTGATGATCAGCGTTGCTCACAATCATTTGTGGTCATCAATGGGGAGGCCATGGAGCAGAGTACACTTATTGGAGCTGTTGATGTTTGTTTTAAAGCATACTATGTCTTTGACATAAACTACCCCAGACAGTGTTCTTCAGTGTGGGAGTTTTTACAGACTGTCGTCTATGAACTGCCAGGTCAGGAATCTCCCTCTGTAAGACTTTTGCGggcatttattttttccacccaGTAGTGAAGCTCGTTTGCAGCTCCTTTGTATATTATacatgtttgtaaaaaaaaaatgttgttactgagatgtttttgttgatgtaaaatagaGAACGGTTGTTGTTAATTAGAAATGTTTATGAAATGAAGAATAGTTGATGATGAGAAATGTTGATGAAATGGAGAATGGTTGATGTTAATATATGTTGATGAGAAATGATGAAATGTTGATGAAACGGAGAATGGTTGTTGGTGAGAAATAATGTTGAAATGATGTTAATGAAATGGTTATTGAGATGTTGTTGAGAAGAAATGGTGTTATGGTTTTGAGAAATTACTTTGttgaaaaattacaaaaacaataaagcaTTTTATTGTTAA
>XM_022665065.1
tgtaaacagtgttttttaataagcttcttgcgcactttttaaatgattaattccttgttttaaatgtggaaCTACTTTGGGCTGAATAATGGTGGAAAGGGAAAATCATGCCCTGTGTCACTCTGATGGATGTTCGGACATTTCTGCATCTCGaaatgctgtgggagaacggaggtgtgctatatcaaaggtaagtactttttatcatgttttactacaataaaagtcaGTTTTACACCGCAGTTGTCCTTTAAGGATGTGATTATTACATGAAATGTAACTGTTTTAACCTGTGACCCTAACCCATAAGCCTCCTAGCAGGTTTTGCCTCTAAGGAGTTTAGGTaagttgaaaaaaattaaaggagttGTTTTAATGCAAAAAATCGCATTTGGCACCTTTTAGTTTTTAACTGTTGTAAAGGCCTACTTCATAATGCAAAACTATAGATGTTATTCAGTTACCAAACATATAAATTTTAATATTCAACaaataatcttattttttccaaagatTTCTGATTTCATAGAGTATGTGCTGCCTTTCATATGTTTTGCTGTTCTTCACAATActaattttattcagtttattcagtCTTCAAAGGATCCTCAGCATGAGCTGGTTGAGTATGGCCCTACAGCAGGACCATCAATGGACCAGCAGCATGAGGCCATGTCTTCAGGACAAGGAGAattgtttGGAGGCCCTCAACAAAACACCAGATGGTAGAGACATAGTGTGCAGTCTTGACACAGAACAGTGCCTCTCGCTTAAGCAGCGGAGGGCTATGGTTCGAATCCTAGTGTCATATCTCATCGAGCGGTTTGGAGAGACTCCATCATcggaaacaaagaaaaacatggccTCTTCTTTGGTGACTGAATTTCCATGTCTAAAAGATCAGCATGGGAATGGCAATgaagcATGGTATAGTCCAGGTCGAAACCACAGACCAGCAACTGGCTTCATTGAAGAACGTTTAAGAAATGTACGGAAGAGGCTCCGTAGTGGAACGAGCAGACCTAGCCATGTGGAGAACAACGTAATCAGTAGTTTGGTTTTGCCAGagaCTGAAATATCTGATGAGAGGGCAGAGGCAATGATGGAGTGGCTAAAAAATAACATCAGACCCCTAAGCCAAGTTGAAGAATACATGAAGCAGACAGCCATCCATAGAGCTAAGTGGATAAGGGAGCATGGGTCAAAGACCATGGAAGAGATCAAGAGAGAGTATCCACGTCTGCTGGATACACCAGGAATGatTGCTCAGGACTTTTCCATTTTACACCCAGCCTGTGCCGGGAAACTTGCAGAAAAGTGGATGCCTGTTTTCAAAGACAAAATTTTACGATTTGCTAGCCAGGAGAAGCAAGCTTCTGGAATTATTTCCAAAGTGGATTCTGTGTGTACAGATGCACAAGGTGATATGGCTTTGAAATTATTGCCAGTAATCCTTCCAGCTTCTGTCTATAGGATTGGTCGGAAGAGCTTCCGTCCAAGCtgtgaagaaacaaaaaaatcatttattgatCTGCAACCAGTTGGGACTAATATGGTGGAATTCCTGTCCGAGGCACAAGGCACAAGACCTTACCCGTTTGTTTTGGCTCTAGGTGATGATCAGCGTTGCTCACAATCATTTGTGGTCATCAATGGGGAGGCCATGGAGCAGAGTACACTTATTGGAGCTGTTGATGTTTGTTTTAAAGCATACTATGTCTTTGACATAAACTACCCCAGACAGTGTTCTTCAGTGTGGGAGTTTTTACAGACTGTCGTCTATGAACTGCCAGGTCAGGAATCTCCCTCTGTAAGACTTTTGCGggcatttattttttccacccaGTAGTGAAGCTCGTTTGCAGCTCCTTTGTATATTATacatgtttgtaaaaaaaaaatgttgttactgagatgtttttgttgatgtaaaatagaGAACGGTTGTTGTTAATTAGAAATGTTTATGAAATGAAGAATAGTTGATGATGAGAAATGTTGATGAAATGGAGAATGGTTGATGTTAATATATGTTGATGAGAAATGATGAAATGTTGATGAAACGGAGAATGGTTGTTGGTGAGAAATAATGTTGAAATGATGTTAATGAAATGGTTATTGAGATGTTGTTGAGAAGAAATGGTGTTATGGTTTTGAGAAATTACTTTGttgaaaaattacaaaaacaataaagcaTTTTATTGTTAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU408330 False 685 TUCP 0.36 2 1845913 1846761
XM_022665063.1 False 1934 mRNA 0.42 12 1845913 1857822
XM_022665064.1 False 1925 mRNA 0.43 12 1845913 1857822
XM_022665065.1 True 2208 mRNA 0.39 9 1845913 1849849

Neighbor

gene id symbol gene type direction distance location
LOC111191055 NA coding downstream 284513 1553406 ~ 1561400 (-)
LOC103045206 LOC108413642 coding downstream 299976 1497029 ~ 1545937 (-)
LOC103044891 fam171a2 coding downstream 352040 1393162 ~ 1493873 (-)
LOC103043375 tcap,LOC108413611 coding downstream 483992 1359317 ~ 1361921 (-)
LOC103043996 LOC108413591 coding downstream 584925 1229707 ~ 1260988 (-)
LOC111191030 NA coding upstream 419544 2277366 ~ 2281361 (-)
trnat-cgu_5 NA coding upstream 423157 2280979 ~ 2281051 (-)
trnar-ucg_44 NA coding upstream 423318 2281140 ~ 2281212 (-)
trnac-aca_6 NA coding upstream 423682 2281504 ~ 2281576 (-)
trnac-aca_7 NA coding upstream 423784 2281606 ~ 2281678 (-)
G296884 NA non-coding downstream 32834 1775217 ~ 1813079 (-)
G296887 NA non-coding downstream 50143 1792519 ~ 1795770 (-)
G296872 NA non-coding downstream 102809 1742807 ~ 1743104 (-)
G296870 NA non-coding downstream 116424 1729109 ~ 1729489 (-)
G296865 NA non-coding downstream 136893 1708487 ~ 1709020 (-)
LOC103031477 NA non-coding upstream 40054 1897876 ~ 1909405 (-)
G296960 NA non-coding upstream 118402 1976224 ~ 1978090 (-)
trnac-gca_40 NA non-coding upstream 153585 2011407 ~ 2011478 (-)
trnas-gcu_8 NA non-coding upstream 153905 2011727 ~ 2011798 (-)
trnay-gua_55 NA non-coding upstream 154118 2011940 ~ 2012011 (-)
LOC107197178 syngr1a,LOC108413620,LOC107582870,LOC107694963,LOC107727456,LOC107684634,LOC107725053,LOC107590782 other downstream 457204 1371515 ~ 1388709 (-)
LOC103037146 NA other upstream 639393 2497215 ~ 2531502 (-)
G297195 kpna2,LOC108432045,LOC108261381 other upstream 1366385 3224207 ~ 3227171 (-)
G297334 farsa,LOC106601350 other upstream 1738665 3596487 ~ 3610695 (-)
elof1 elof1,LOC101167459 other upstream 2494793 4352615 ~ 4355768 (-)
G297720 NA other upstream 2507755 4365577 ~ 4366130 (-)

Expression


Co-expression Network