G296984


Basic Information

Item Value
gene id G296984
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NW_019172828.1
NCBI id APWO02000046.1
chromosome length 5964967
location 2220179 ~ 2221329 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU408371
tgccacacaggtgcctgGCAAACCTGgctggtacagattcccctaattacatccacaccaaagcaaacactggtaatttacgctgctagtaaataaacacgagtgttactgaccaaaataaacgctttttatgagagatataagttctgtgtaaatatttataagacaatacctgacaaaatcagttttaatgacgttaaataaacatcactgtgacagcgctagtcgcagtttcaccgcagtaaaggacgaggaggtgaatcacttatctaaccagcctttactgatttctgctccaataaccctttcaataacctccaatagcctttaatagtcttcagtagccttcaacagtctaaccttgcagccgtggtgtgtccactaaactccgtagttataaacatcatgaggttagcagcgcgctaactgacctgtttataatgtaatccgagcagtgcctccgtgacaactgctgctgttagctgctttggCTGAAaggtgaactgtagagagctgtattatccgtttttaaaaccttttcctacacagatgaacttaaaaaaaaacgtgtaaaaaaaaacgctccagactggctgagctgagctctgtagcccgtggctgggctgtagctgtgactgagtaaagacagcgggggcttgtgctgctgcagctccgactagtggttggatgaggaactgcagcttcttgtaagtgagcagtttcaccggtttcaccagtttcatccacacacagctctgataaactgcttaaccctaaactcctgaatcagatcggctaaaatcataagaatatctgcagaacagtgttaatatgcagaagaatatacagaacagtgttaatatgcagtagaatatgcaggatcagggttgagaaacactgctgtaatgtgacttctgttcatttgtagttcacagtaagaccacatgtcctgacgtttataaaaatctctatgaaacataaagttacattattttacacaaggacaccatcttaagaagagctctcagtagaaaaaaagagtggagaaaatgtaaatatgaaaatgaaaacgttatctaaaatgtgtcacttgacaataaggttatacacagactattaaatgtttgaataatgtgtcaacatttatgcct

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU408371 True 1151 lncRNA 0.40 1 2220179 2221329

Neighbor

gene id symbol gene type direction distance location
LOC103028117 crhr1,LOC108413653,LOC107662410,LOC108261365 coding upstream 98685 1844980 ~ 2121494 (+)
LOC103044572 NA coding upstream 869259 1334340 ~ 1350920 (+)
rnd2 rnd2,LOC108413538,LOC108273890,LOC107708553,LOC107552458,LOC107754744,LOC107567027 coding upstream 1143624 1036346 ~ 1076555 (+)
LOC103035075 NA coding upstream 1255740 961281 ~ 964439 (+)
LOC103032830 NA coding upstream 1261748 949304 ~ 958431 (+)
LOC111191060 ntn1,LOC107583316,LOC107728387,LOC107672692,LOC107719327,LOC107703884,LOC107563365 coding downstream 327821 2549150 ~ 2688790 (+)
LOC111191061 NA coding downstream 453419 2674748 ~ 2678277 (+)
LOC111191042 LOC108432083 coding downstream 547335 2768664 ~ 2925185 (+)
LOC103026062 LOC108432079 coding downstream 943720 3165049 ~ 3216189 (+)
LOC103025752 kpna2,LOC108432045,LOC108261381 coding downstream 998600 3219929 ~ 3227171 (+)
G296977 NA non-coding upstream 19777 2200166 ~ 2200402 (+)
G296944 NA non-coding upstream 68140 2151461 ~ 2152039 (+)
G296943 NA non-coding upstream 81260 2138713 ~ 2138919 (+)
G296892 NA non-coding upstream 90387 2124697 ~ 2129792 (+)
G296923 NA non-coding upstream 227908 1991816 ~ 1992271 (+)
G296985 NA non-coding downstream 6320 2227649 ~ 2228204 (+)
G296986 NA non-coding downstream 6964 2228293 ~ 2228732 (+)
G296989 NA non-coding downstream 50608 2271937 ~ 2272203 (+)
G296999 NA non-coding downstream 265413 2486742 ~ 2487644 (+)
G297003 NA non-coding downstream 273760 2495089 ~ 2495801 (+)
G296790 tcap,LOC108413611 other upstream 858244 1359112 ~ 1361935 (+)
LOC103044283 LOC103044283,LOC108412482 other upstream 929759 1287516 ~ 1290420 (+)
G296679 tlk2,LOC108413572,LOC107660745 other upstream 1019391 1191763 ~ 1200788 (+)
mien1 mien1,sepw2a,LOC107566883 other upstream 1386121 826378 ~ 834058 (+)
LOC103026352 ndufa4l,LOC103026352,LOC108413413,LOC108260900,LOC107684646,LOC107590798,LOC103357383,LOC107582867 other upstream 2179288 36833 ~ 40891 (+)
LOC111191028 grb2b,grb2,LOC108432081,LOC107719324,LOC108256494,LOC107672691,LOC107672145,LOC107723603 other downstream 821103 3042432 ~ 3148603 (+)
LOC103030733 NA other downstream 1328998 3550327 ~ 3640614 (+)
LOC103041102 LOC108440983,LOC108258030,LOC107718582,LOC107661664,LOC107715658,LOC107695723,LOC107550253 other downstream 2031687 4253016 ~ 4299447 (+)
znf653 znf653,LOC106601361,LOC107553636,LOC104961106,LOC103393609 other downstream 2198668 4419997 ~ 4434071 (+)
LOC111191039 NA other downstream 2429314 4650643 ~ 4675621 (+)

Expression


Co-expression Network