G297007


Basic Information

Item Value
gene id G297007
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NW_019172828.1
NCBI id APWO02000046.1
chromosome length 5964967
location 2495117 ~ 2495708 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU408396
gaacatcaaagtttaatttttagAACGTTCAAtctgtaaagtttttttaatgattctaAACGTTTTGTTAATGTTGTGATGGAACccattattagaacatttctggAACATTATTACTGTAACTTTGAAGACATTCTTCCTGGTTTTCAATACTTTGATAAATGTTCTTATAGCTGGTTTAACTGGTCTTCAAACATTTTCAACCTGGACCAACTAGACAACCAGTATAGTCAAACCTGACCATCAAAACCAAAGCGATTCACCAGCACAACCAGCaaaaccagcatgaccaaccaAGACTAACAGGAAAAAGTAGTTTTTCGCCTGGATGAGcagcttttcaaccaccttcaccatcaaagaccagcttagatCATCTGAAACCCTCTACCAACTAAAGCCTGGACTTGTGCTGGTCCTGAGACTGTGGTTTCCGTCCAGCAGGTGGAGCTCTAGCTCATTAATTTAAGGTTAAATCATGCattaccttttaaaaataaaccaaatatcATCTTTAAAATGAACACACCTTAACCGTGAATCTTATTTTACACTACTAGTTTTCTTACCTTTATGATCAAATAAATATAGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU408396 True 592 lncRNA 0.36 1 2495117 2495708

Neighbor

gene id symbol gene type direction distance location
mfsd6l NA coding downstream 1342 2489837 ~ 2493775 (-)
trnas-gcu_70 NA coding downstream 198590 2296446 ~ 2296527 (-)
trnas-gcu_69 NA coding downstream 198809 2296227 ~ 2296308 (-)
trnas-gcu_68 NA coding downstream 199028 2296008 ~ 2296089 (-)
trnas-gcu_67 NA coding downstream 199247 2295789 ~ 2295870 (-)
LOC111191031 NA coding upstream 448142 2943850 ~ 2945114 (-)
LOC103026382 LOC108432046,LOC107719342,LOC107602308,LOC107672125,LOC107672690 coding upstream 550522 3046230 ~ 3060717 (-)
gcdh gcdh,LOC102209187,LOC102794743,LOC101471797,LOC107718595 coding upstream 1158669 3654377 ~ 3675494 (-)
LOC103031051 NA coding upstream 1184790 3680498 ~ 3699508 (-)
LOC111191029 NA coding upstream 1272087 3767795 ~ 3781254 (-)
G296998 NA non-coding downstream 12257 2482557 ~ 2482860 (-)
G296987 NA non-coding downstream 266913 2227646 ~ 2228204 (-)
G296980 NA non-coding downstream 285238 2209670 ~ 2209879 (-)
G296978 NA non-coding downstream 294727 2200179 ~ 2200390 (-)
G296974 NA non-coding downstream 342970 2151918 ~ 2152147 (-)
G297009 NA non-coding upstream 10128 2505836 ~ 2506158 (-)
G297032 NA non-coding upstream 153704 2649412 ~ 2659222 (-)
G297034 NA non-coding upstream 170090 2665798 ~ 2682493 (-)
G297038 NA non-coding upstream 196312 2692020 ~ 2692576 (-)
G297039 NA non-coding upstream 201372 2697080 ~ 2697405 (-)
LOC111191047 NA other downstream 637295 1845913 ~ 1857822 (-)
LOC107197178 syngr1a,LOC108413620,LOC107582870,LOC107694963,LOC107727456,LOC107684634,LOC107725053,LOC107590782 other downstream 1106408 1371515 ~ 1388709 (-)
LOC103037146 NA other upstream 1507 2497215 ~ 2531502 (-)
G297195 kpna2,LOC108432045,LOC108261381 other upstream 728499 3224207 ~ 3227171 (-)
G297334 farsa,LOC106601350 other upstream 1100779 3596487 ~ 3610695 (-)
elof1 elof1,LOC101167459 other upstream 1856907 4352615 ~ 4355768 (-)
G297720 NA other upstream 1869869 4365577 ~ 4366130 (-)

Expression


Co-expression Network