G297009


Basic Information

Item Value
gene id G297009
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NW_019172828.1
NCBI id APWO02000046.1
chromosome length 5964967
location 2505836 ~ 2506158 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU408398
GAAGtgaggggatggacgtaagtgcagaatataattaattttattaaattaataaaaactaaaacaaattaacaaacaaacaaaataaaccaaagttacactgaatacataactacaaaacactaaacttgaaaacaggaatctaagaaacagcatgaaacaaacctgaacacggacagcaaacaaaccaacaaaagactagacaaagaaggcttgaaacaaaggggcttatatacacatggagggaacaggaaactggaaacacctgaggatcaatcaagagggggcggggttacaaatcactgatgacagggtggggctag

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU408398 True 323 lncRNA 0.37 1 2505836 2506158

Neighbor

gene id symbol gene type direction distance location
mfsd6l NA coding downstream 12061 2489837 ~ 2493775 (-)
trnas-gcu_70 NA coding downstream 209309 2296446 ~ 2296527 (-)
trnas-gcu_69 NA coding downstream 209528 2296227 ~ 2296308 (-)
trnas-gcu_68 NA coding downstream 209747 2296008 ~ 2296089 (-)
trnas-gcu_67 NA coding downstream 209966 2295789 ~ 2295870 (-)
LOC111191031 NA coding upstream 437692 2943850 ~ 2945114 (-)
LOC103026382 LOC108432046,LOC107719342,LOC107602308,LOC107672125,LOC107672690 coding upstream 540072 3046230 ~ 3060717 (-)
gcdh gcdh,LOC102209187,LOC102794743,LOC101471797,LOC107718595 coding upstream 1148219 3654377 ~ 3675494 (-)
LOC103031051 NA coding upstream 1174340 3680498 ~ 3699508 (-)
LOC111191029 NA coding upstream 1261637 3767795 ~ 3781254 (-)
G297007 NA non-coding downstream 10128 2495117 ~ 2495708 (-)
G296998 NA non-coding downstream 22976 2482557 ~ 2482860 (-)
G296987 NA non-coding downstream 277632 2227646 ~ 2228204 (-)
G296980 NA non-coding downstream 295957 2209670 ~ 2209879 (-)
G296978 NA non-coding downstream 305446 2200179 ~ 2200390 (-)
G297032 NA non-coding upstream 143254 2649412 ~ 2659222 (-)
G297034 NA non-coding upstream 159640 2665798 ~ 2682493 (-)
G297038 NA non-coding upstream 185862 2692020 ~ 2692576 (-)
G297039 NA non-coding upstream 190922 2697080 ~ 2697405 (-)
G297087 NA non-coding upstream 216665 2722823 ~ 2723154 (-)
LOC111191047 NA other downstream 648014 1845913 ~ 1857822 (-)
LOC107197178 syngr1a,LOC108413620,LOC107582870,LOC107694963,LOC107727456,LOC107684634,LOC107725053,LOC107590782 other downstream 1117127 1371515 ~ 1388709 (-)
G297195 kpna2,LOC108432045,LOC108261381 other upstream 718049 3224207 ~ 3227171 (-)
G297334 farsa,LOC106601350 other upstream 1090329 3596487 ~ 3610695 (-)
elof1 elof1,LOC101167459 other upstream 1846457 4352615 ~ 4355768 (-)
G297720 NA other upstream 1859419 4365577 ~ 4366130 (-)
LOC103025426 zgc:158403,LOC108441004,LOC108258290,LOC107718630,LOC107661656,LOC107553678,LOC107695678 other upstream 2569333 5075491 ~ 5112720 (-)

Expression


Co-expression Network