G297013


Basic Information

Item Value
gene id G297013
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NW_019172828.1
NCBI id APWO02000046.1
chromosome length 5964967
location 2692022 ~ 2692623 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU408403
ACTACATTCTacagtacatatatatgtatatatatatatgtgtgtgtactttaCACAGAATGTCCAACACACAGTGCACTCACTAAAAAGCCACTATGAACGTCAAGCTATGAACTCTAGTGTTGGCTTTGAATGAATATTATTAGTGCATTCTCTCAGTTAGAgccatatataaataaatacattgaccCAACATGGACATTTCAACCGATTCTCCAGCTCTCCTGTGGAGAATTATCCAGCAGGACAGGTTCTGAATGAAGACCCAGCCATTGTTCATTGTTCACCCACCTGTAAATGGAGTTTAGCTGTATtctttgcataaaaaaaaaacgaaataaaataaaagctgtgtTTTGTCTTGTAATGCATACTAATATATAATGGTtctcataaaaaacaaaaaatgaatatatttaatgataCCTGAATTTACAtgcctttgttttttgttattgttgctATCATTTTTTGTCTCTGGGTATTGTTTCTGTCTCGCGACGGGATTGGGTGTTGTGCCGAGAACGAGTTGTAACCATTCGACGTGCAGATAGTGAGAAAATGGAAGTTGTTTTCAATAAACCCTTGTAAACATTGAATAC

Function

GO:

id name namespace
GO:0030154 cell differentiation biological_process
GO:0030182 neuron differentiation biological_process
GO:0021872 forebrain generation of neurons biological_process
GO:0021879 forebrain neuron differentiation biological_process
GO:0021884 forebrain neuron development biological_process
GO:0048869 cellular developmental process biological_process
GO:0007399 nervous system development biological_process
GO:0030900 forebrain development biological_process
GO:0022008 neurogenesis biological_process
GO:0048699 generation of neurons biological_process

KEGG:

id description
ko04360 Axon guidance

RNA

RNA id representative length rna type GC content exon number start site end site
TU408403 True 602 lncRNA 0.35 1 2692022 2692623

Neighbor

gene id symbol gene type direction distance location
LOC111191060 ntn1,LOC107583316,LOC107728387,LOC107672692,LOC107719327,LOC107703884,LOC107563365 coding upstream 3232 2549150 ~ 2688790 (+)
LOC111191061 NA coding upstream 13745 2674748 ~ 2678277 (+)
LOC103028117 crhr1,LOC108413653,LOC107662410,LOC108261365 coding upstream 570528 1844980 ~ 2121494 (+)
LOC103044572 NA coding upstream 1341102 1334340 ~ 1350920 (+)
rnd2 rnd2,LOC108413538,LOC108273890,LOC107708553,LOC107552458,LOC107754744,LOC107567027 coding upstream 1615467 1036346 ~ 1076555 (+)
LOC111191042 LOC108432083 coding downstream 76041 2768664 ~ 2925185 (+)
LOC103026062 LOC108432079 coding downstream 472426 3165049 ~ 3216189 (+)
LOC103025752 kpna2,LOC108432045,LOC108261381 coding downstream 527306 3219929 ~ 3227171 (+)
LOC103025443 smurf2,LOC108432078,LOC108254810,LOC107748797,LOC107695141,LOC105891874 coding downstream 535835 3228458 ~ 3326996 (+)
LOC103024726 LOC103024726,LOC108432077,LOC108257112,LOC107583258,LOC107748799,LOC103360002,LOC105013158 coding downstream 640256 3332879 ~ 3342234 (+)
G297023 NA non-coding upstream 14062 2675575 ~ 2677960 (+)
G297022 NA non-coding upstream 18076 2671700 ~ 2673946 (+)
G297021 NA non-coding upstream 22160 2668672 ~ 2669862 (+)
G297018 NA non-coding upstream 32801 2654772 ~ 2659221 (+)
G297016 NA non-coding upstream 40063 2649415 ~ 2651959 (+)
G297040 NA non-coding downstream 6087 2698710 ~ 2698926 (+)
G297042 NA non-coding downstream 22653 2715276 ~ 2777154 (+)
G297043 NA non-coding downstream 27284 2719907 ~ 2723548 (+)
G297056 NA non-coding downstream 128500 2821123 ~ 2821452 (+)
G297059 NA non-coding downstream 172755 2865378 ~ 2865626 (+)
G296790 tcap,LOC108413611 other upstream 1330087 1359112 ~ 1361935 (+)
LOC103044283 LOC103044283,LOC108412482 other upstream 1401602 1287516 ~ 1290420 (+)
G296679 tlk2,LOC108413572,LOC107660745 other upstream 1491234 1191763 ~ 1200788 (+)
mien1 mien1,sepw2a,LOC107566883 other upstream 1857964 826378 ~ 834058 (+)
LOC103026352 ndufa4l,LOC103026352,LOC108413413,LOC108260900,LOC107684646,LOC107590798,LOC103357383,LOC107582867 other upstream 2651131 36833 ~ 40891 (+)
LOC111191028 grb2b,grb2,LOC108432081,LOC107719324,LOC108256494,LOC107672691,LOC107672145,LOC107723603 other downstream 349809 3042432 ~ 3148603 (+)
LOC103030733 NA other downstream 857704 3550327 ~ 3640614 (+)
LOC103041102 LOC108440983,LOC108258030,LOC107718582,LOC107661664,LOC107715658,LOC107695723,LOC107550253 other downstream 1560393 4253016 ~ 4299447 (+)
znf653 znf653,LOC106601361,LOC107553636,LOC104961106,LOC103393609 other downstream 1727374 4419997 ~ 4434071 (+)
LOC111191039 NA other downstream 1958020 4650643 ~ 4675621 (+)

Expression


Co-expression Network