G297032


Basic Information

Item Value
gene id G297032
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NW_019172828.1
NCBI id APWO02000046.1
chromosome length 5964967
location 2649412 ~ 2659222 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU408446
agtaggcaccattgtgctagttggtgcttgatgaagcgccatttaattcagaactagatttataataacttcgtaattacatgtcatatcagaacattcactcctttgtgttaatttaaacttgtttggtcaaacatttcagcttgttctgcaaaggttcaaaggtcaatctgaataccactttgtgaacattctggttgaagccacctgatcaataccaataacatgtagacaccttttgactagttctaactcacttaatgaatatcctacaaagttcactagatttacatgtgaatttaagcactgatcaggttgaaaggcctctgctcaacattaataacaggtgaaaaacttgataatttctaaatgtgacagggcatctccaatcatattagaccttcttacacatcaccattcaatgctccagtaggcaccattgtgcaagttggtgcttgaacccgatgattgccgcttgcggctatatttattattattattattctttttctcctgtaaaaacagttgtgcagcctaaaccgtaagtcatagagaaatgaaacttggtaggtagatgtaggatcagtgcatctcggtggacaacaaaaatggcaccgattggtcaagtggtggcgctataaacaaggaaattcatttttcacaattttctcaataactcaaaaaccataagacctacattcaaaattctttgtttgatggattccttgggtcaataccaacaactttccaatttggaccatgcacttccgtctatatagattttttgctaatttgcataatatgcaaaacctacttttgcaaactagtcct
>TU408449
cctagcaagttgaaactttgcatgcagaatctatcatacagcctctaaaggatgttcaaagggcaacttaatcaatcaacatggctgaacaccatcagccaatcagcattcagcagacattttggcaggctgaatgttgcccaatctggatgatatttggcagttatgttcaggtggagacactgtagtgacctgcaaagtgctgaaacaatccgcccactggggggcgctgttccaaaaaaacgagtatatgtcaatcatgctgtactattttgacatctaattgtttttgccatatttagtacagtggctctgacaaatttctcaatacaactatgtttaaaaagtgctttgttcattcataattgctaattgtttgaaaatagctatattgaaactactctctggatatttggcctatcacctccatttcagtcttgctgcacactgtagagtctctaggtaaatgttcattaaaaacatttgtgaaaatttcacatacaatactctccaggcatcaagcaatctgtgcgtccttggaatttctaacctaaattgctgtaactctgcagtatttgctgtaatctcacaatgttaaagacctctgtacaatatcactctgatgaagcgccatttaatacagaactagattaagaataacttgacattacatgtcatatcagaacattcactcctttgtgcctcttctcaacattaataacaggtgaaagacttttgatcatttctaaatgtgacagaatgtctccaattgtgttagaccttcttacacatcaccatcctatgctctagtaggcaccattgtgctagttggtgcttgatgaagcgccatttaattcagaactagatttataataacttcgtaattacatgtcatatcagaacattcactcctttgtgttaatttaaacttgtttggtcaaacatttcagcttgttctgcaaaggttcaaaggtcaatctgaataccactttgtgaacattctggttgaagccacctgatcaataccaataacatgtagacaccttttgactagttctaactcacttaatgaatatcctacaaagttcactagatttacatgtgaatttaagcactgatcaggttgaaaggcctctgctcaacattaataacaggtgaaaaacttgataatttctaaatgtgacagggcatctccaatcatattagaccttcttacacatcaccattcaatgctccagtaggcaccattgtgcaagttggtgcttgaacccgatgattgccgcttgcggctatatttttta
>TU408452
cctagcaagttgaaactttgcatgcagaatctatcatacagcctctaaaggatgttcaaagggcaacttaatcaatcaacatggctgaacaccatcagccaatcagcattcagcagacattttggcaggctgaatgttgcccaatctggatgatatttggcagttatgttcaggtggagacactgtagtgacctgcaaagtgctgaaacaatccggccactggggggcgctgttccaaaaaaacgagtatatgtcaatcatgctgtactattttgacatctaattgtttttgccatatttagtacagtggctctgacaaatttctcaatacaactatgtttaaaaagtgctttgttcattcataattgctaattgtttgaaaatagctatattgaaactactctctggatatttggcctatcacctccatttcagtcttgctgcacactgtagagtctctaggtaaatgttcattaaaaacatttgtgaaaatttcacatacaatactctccaggcatcaagcaatctgtgcgtccttggaatttctaacctaaattgctgtaactctgcagtatttgctgtaatctcacaatgttaaagacctctgtacaatatcactctgatgaagcgccatttaattcagaactagattaagaataacttgacattacatgtcatatcagaacattcactcctttgtgcctcttctcaacattaataacaggtgaaagacttttgatcattttaaatgtgacagaatgtctccaattgtgttagaccttcttacacatcaccatcctatgctctagtaggcaccattgtgctagttggtgcttgatgaagcgccatttaattcagaactagatttataataacttcgtaattacatgtcatatcagaacattcactcctttgtgttaatttaaacttgtttggtcaaacatttcagcttgttctgcaaaggttcaaaggtcaatctgaataccactttgtgaacattctggttgaagccacctgatcaataccaataacatgtagacaccttttgactagttctaactcacttaatgaatatcctacaaagttcactagatttacatgtgaatttaagcactgatcaggttgaaaggcctctgctcaacattaataacaggtgaaaaacttgataatttctaaatgtgacagggcatctccaatcatattagaccttcttacacatcaccattcaatgctccagtaggcaccattgtgcaagttggtgcttgaacccgatgattgccgcttgcggctatatttttta
>TU408453
cctagcaagttgaaactttgcatgcagaatctatcatacagcctctaaaggatgttcaaagggcaacttaatcaatcaacatggctgaacaccatcagccaatcagcattcagcagacattttggcaggctgaatgttgcccaatctggatgatatttggcagttatgttcaggtggagacactgtagtgacctgcaaagtgctgaaacaatccgaccactggggggcgct
>TU408454
cctagcaagttgaaactttgcatgcagaatctatcatacagcctctaaaggatgttcaaagggcaacttaatcaatcaacatggctgaacaccatcagccaatcagcattcagcagacattttggcaggctgaatgttgcccaatctggatgatatttggcagttatgttcaggtggagacactgtagtgacctgcaaagtgctgaaacaatccgcccactggggggcgctgttccaaaaaaacgagtatatgtcaatcatgctgtactattttgacatctaattgtttttgccatatttagtacagtggctctgacaaatttctcaatacaactatgtttaaaaagtgctttgttcattcataattgctaattgtttgaaaatagctatattgaaactactctctggatatttggcctatcacctccatttcagtcttgctgcacactgtagagtctctaggtaaatgttcattaaaaacatttgtgaaaatttcacatacaatactctccaggcatcaagcaatctgtgcgtccttggaatttctaacctaaattgctgtaactctgcagtatttgctgtaatctcacaatgttaaagacctctgtacaatatcactctgatgaagcgccatttaatacagaactagattaagaataacttgacattacatgtcatatcagaacattcactcctttgtgcctcttctcaacattaataacaggtgaaagacttttgatcatttctaaatgtgacagaatgtctccaattgtgttagaccttcttacacatcaccatcctatgctctagtaggcaccattgtgctagttggtgcttgatgaagcgccatttaattcagaactagatttataataacttcgtaattacatgtcatatcagaacattcactcctttgtgttaatttaaacttgtttggtcaaacatttcagcttgttctgcaaaggttcaaaggtcaatctgaataccactttgtgaacattctggttgaagccacctgatcaataccaataacatgtagacaccttttgactagttctaactcacttaatgaatatcctacaaagttcactagatttacatgtgaatttaagcactgatcaggttgaaaggcctctgctcaacattaataacaggtgaaaaacttgataatttctaaatgtgacagggcatctccaatcatattagaccttcttacacatcaccattcaatgctccagtaggcaccattgtgcaagttggtgcttgaacccgatgattgccgcttgcggctatatttttta

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU408446 False 831 lncRNA 0.36 2 2654644 2659222
TU408449 True 1301 lncRNA 0.38 4 2649412 2658126
TU408452 False 1300 lncRNA 0.37 2 2649412 2658126
TU408453 False 231 lncRNA 0.46 2 2654224 2658126
TU408454 False 1301 lncRNA 0.38 4 2649412 2658126

Neighbor

gene id symbol gene type direction distance location
mfsd6l NA coding downstream 155637 2489837 ~ 2493775 (-)
trnas-gcu_70 NA coding downstream 352885 2296446 ~ 2296527 (-)
trnas-gcu_69 NA coding downstream 353104 2296227 ~ 2296308 (-)
trnas-gcu_68 NA coding downstream 353323 2296008 ~ 2296089 (-)
trnas-gcu_67 NA coding downstream 353542 2295789 ~ 2295870 (-)
LOC111191031 NA coding upstream 284628 2943850 ~ 2945114 (-)
LOC103026382 LOC108432046,LOC107719342,LOC107602308,LOC107672125,LOC107672690 coding upstream 387008 3046230 ~ 3060717 (-)
gcdh gcdh,LOC102209187,LOC102794743,LOC101471797,LOC107718595 coding upstream 995155 3654377 ~ 3675494 (-)
LOC103031051 NA coding upstream 1021276 3680498 ~ 3699508 (-)
LOC111191029 NA coding upstream 1108573 3767795 ~ 3781254 (-)
G297009 NA non-coding downstream 143254 2505836 ~ 2506158 (-)
G297007 NA non-coding downstream 153704 2495117 ~ 2495708 (-)
G296998 NA non-coding downstream 166552 2482557 ~ 2482860 (-)
G296987 NA non-coding downstream 421208 2227646 ~ 2228204 (-)
G296980 NA non-coding downstream 439533 2209670 ~ 2209879 (-)
G297034 NA non-coding upstream 6576 2665798 ~ 2682493 (-)
G297038 NA non-coding upstream 32798 2692020 ~ 2692576 (-)
G297039 NA non-coding upstream 37858 2697080 ~ 2697405 (-)
G297087 NA non-coding upstream 63601 2722823 ~ 2723154 (-)
G297088 NA non-coding upstream 78062 2737284 ~ 2738042 (-)
LOC103037146 NA other downstream 117910 2497215 ~ 2531502 (-)
LOC111191047 NA other downstream 791590 1845913 ~ 1857822 (-)
LOC107197178 syngr1a,LOC108413620,LOC107582870,LOC107694963,LOC107727456,LOC107684634,LOC107725053,LOC107590782 other downstream 1260703 1371515 ~ 1388709 (-)
G297195 kpna2,LOC108432045,LOC108261381 other upstream 564985 3224207 ~ 3227171 (-)
G297334 farsa,LOC106601350 other upstream 937265 3596487 ~ 3610695 (-)
elof1 elof1,LOC101167459 other upstream 1693393 4352615 ~ 4355768 (-)
G297720 NA other upstream 1706355 4365577 ~ 4366130 (-)
LOC103025426 zgc:158403,LOC108441004,LOC108258290,LOC107718630,LOC107661656,LOC107553678,LOC107695678 other upstream 2416269 5075491 ~ 5112720 (-)

Expression


Co-expression Network