G297063


Basic Information

Item Value
gene id G297063
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NW_019172828.1
NCBI id APWO02000046.1
chromosome length 5964967
location 2929187 ~ 2931917 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU408512
TTTAGTAAGTGCCTTTTTTTGTATCGGTTCCTGAAAGAGTAGCATTGTTATTGCACCCAACagtcacatgcacacactctgaaactatatgtatatttataaacacCTGTATTATCGTTGGTAAAGCAGTATATagtaccagacaaaagtttggaACTCCTTTTCCAGTATTGTAGATTACTACTGAATAGattgggccctatcgtacaccctgcacaaggaacttcatgatgctcattgctatcttacaccccaacaaccgtctattttcatgccttgcgccTGCGTCGTGGTCTAGAAtttaggtgtgttcaggttaaaGTGTTCAGGCAACCGGGGAAACACAAAAAACGGTACACcacagacgttcattgctatcttggcagggAATTGTCAATTGAAGGGCCCATACACATAGctgtgcacaaacccaacttttacatcaacaataaacagaatgaatgatCATGAACAAGCAGCTCTGTTTCAATTACTGAAAAGTGCAAGACAATTCCAGgtagctgcacccctgaaatagcaatctgccaaagtccaTACTTTCCATACATAATACATGACTTTTGCAAGTTTCGAatcgcacaaggtgtacttttcccgtcgttatgatagaaaagacatactgacacagcctaaatcaagctgcacggtgcatgATTGATAGCTTGCCTACAGACTGCTAAAATGGGGCACTTTGACAtgatgaagaaacacatatatCGTCAAAGAAATAGTAGCATTTAGAAGGAAGTGCCACCAgactgatatatttttttctcattttctccccaatttagctaggccaattgtcccacccattcagctgctactcagctataACTAGTGATGCCAAAACACAAGGAGTTtcaagactagcacatgcctcctccgatacatggaaaatcagactccgcctatttttgaactgttgccgagtagcatcacagcgctaatgctcggaggaaaacacagcgactcggttctgatacatcagctcacagatgcagccttgtgcttatcaacatcaccctagaagtgatgaggggaaagagcgccatctactccacccacccagagagagagcaagaccaattgtgctctctcagggctccggcagctgatggcaagctgcatgaccgggattcgataCATGACTAGCGAtcttccgatcatagtggcagcgttttaaacttttgtctggtactgtatacCCAATCGTTTGCACATTTCACACACGTTTAAGTGTAGCTGCTAACATAATCTGCACACTGGACATTATAGcatgtataacacacacacacagctcgcACACGTGtcttcattacacacacatattcacatgACCGTGCATATGTTACTGTTATTGCATCATCCCTGCTGTTGCCATGCAGATACGATCAATCAGAGCGAGAGGCTGATGTATAAATCATCTTTCTCTCCGTCTTCAGTTCTGCCACCTGTAGTCATTAGTGCATCAGTCCGTCAGTCACTGTAAGTCTGGGCAGTATAGAATAACAGgcaatgcttttttattttatttcatttgctACAGATATCTAGCAAACCCTTGTATCTTCAAAATGGTGACTTTAATTTACCACCTCAAATCAGAAATTGTGGGAAAAGAATGGAAAAAGGcggaaaataaagttttttacatttactttgacttgtATTTGATTACAGACAGTAAGAACccaaaattaattttgtttttttgtctgttcaACTTCAATTAATGTATTGATAAACATTCATTCCAGCATTTAAGGTCTACAACACATTCTTGAACTAGTAatggaacaaaaacaaaataaaataatgaaataatagtaattattgAGCTGTATCcataagtcaagtcaagtacttttattGGCAATAGTGATGAGGGGGAGATTAAAGAGGGAATGACAGCATATACAAGTATAAACAGCACCCGTACAAACATTAGTGCAAATATAGTTTATAAgtgcttaaagcagcactaggtagggtttccttgatttttgatcttt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU408512 True 2036 lncRNA 0.40 3 2929187 2931917

Neighbor

gene id symbol gene type direction distance location
LOC111191042 LOC108432083 coding upstream 4002 2768664 ~ 2925185 (+)
LOC111191060 ntn1,LOC107583316,LOC107728387,LOC107672692,LOC107719327,LOC107703884,LOC107563365 coding upstream 240397 2549150 ~ 2688790 (+)
LOC111191061 NA coding upstream 250910 2674748 ~ 2678277 (+)
LOC103028117 crhr1,LOC108413653,LOC107662410,LOC108261365 coding upstream 807693 1844980 ~ 2121494 (+)
LOC103044572 NA coding upstream 1578267 1334340 ~ 1350920 (+)
LOC103026062 LOC108432079 coding downstream 233132 3165049 ~ 3216189 (+)
LOC103025752 kpna2,LOC108432045,LOC108261381 coding downstream 288012 3219929 ~ 3227171 (+)
LOC103025443 smurf2,LOC108432078,LOC108254810,LOC107748797,LOC107695141,LOC105891874 coding downstream 296541 3228458 ~ 3326996 (+)
LOC103024726 LOC103024726,LOC108432077,LOC108257112,LOC107583258,LOC107748799,LOC103360002,LOC105013158 coding downstream 400962 3332879 ~ 3342234 (+)
LOC111191052 NA coding downstream 414528 3346445 ~ 3357240 (+)
G297070 NA non-coding upstream 25652 2903076 ~ 2903535 (+)
G297065 NA non-coding upstream 38172 2890448 ~ 2891015 (+)
G297059 NA non-coding upstream 63561 2865378 ~ 2865626 (+)
G297056 NA non-coding upstream 107735 2821123 ~ 2821452 (+)
G297042 NA non-coding upstream 152033 2715276 ~ 2777154 (+)
G297116 NA non-coding downstream 48176 2980093 ~ 2980371 (+)
G297126 NA non-coding downstream 88596 3020513 ~ 3021157 (+)
G297128 NA non-coding downstream 102595 3034512 ~ 3035614 (+)
G297190 NA non-coding downstream 285754 3217671 ~ 3218609 (+)
G297203 NA non-coding downstream 374252 3306169 ~ 3312518 (+)
G296790 tcap,LOC108413611 other upstream 1567252 1359112 ~ 1361935 (+)
LOC103044283 LOC103044283,LOC108412482 other upstream 1638767 1287516 ~ 1290420 (+)
G296679 tlk2,LOC108413572,LOC107660745 other upstream 1728399 1191763 ~ 1200788 (+)
mien1 mien1,sepw2a,LOC107566883 other upstream 2095129 826378 ~ 834058 (+)
LOC103026352 ndufa4l,LOC103026352,LOC108413413,LOC108260900,LOC107684646,LOC107590798,LOC103357383,LOC107582867 other upstream 2888296 36833 ~ 40891 (+)
LOC111191028 grb2b,grb2,LOC108432081,LOC107719324,LOC108256494,LOC107672691,LOC107672145,LOC107723603 other downstream 110515 3042432 ~ 3148603 (+)
LOC103030733 NA other downstream 618410 3550327 ~ 3640614 (+)
LOC103041102 LOC108440983,LOC108258030,LOC107718582,LOC107661664,LOC107715658,LOC107695723,LOC107550253 other downstream 1321099 4253016 ~ 4299447 (+)
znf653 znf653,LOC106601361,LOC107553636,LOC104961106,LOC103393609 other downstream 1488080 4419997 ~ 4434071 (+)
LOC111191039 NA other downstream 1718726 4650643 ~ 4675621 (+)

Expression


Co-expression Network