G297128


Basic Information

Item Value
gene id G297128
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NW_019172828.1
NCBI id APWO02000046.1
chromosome length 5964967
location 3034512 ~ 3035614 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU408584
CCTGGCTCAacaaattttttaaatattatattatgcaAAAAACTTGCTCTGCATCTGCGCAATACTTTGGTTCGACTggccaatctggcaaccctgcttCAAAACGAGGCTTGTGACCAGTCCACTTATCAACTATATCTCTTCTGATTGGTTGGAACATTCACGCGACTGCTTGCTGCTAGAATTGTCTACAGCTTGGCATTTTGTTCTGGTCGTAAGCTAGCTGTTCACATTCTACATTTCTGGATCTGCGAGGCAGCCAGCACCTGAGCTGGGGTGAGAAGATGGACATACgttctttttttaagaacaaaggTGAACGCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU408584 True 324 lncRNA 0.44 2 3034512 3035614

Neighbor

gene id symbol gene type direction distance location
LOC111191042 LOC108432083 coding upstream 109327 2768664 ~ 2925185 (+)
LOC111191060 ntn1,LOC107583316,LOC107728387,LOC107672692,LOC107719327,LOC107703884,LOC107563365 coding upstream 345722 2549150 ~ 2688790 (+)
LOC111191061 NA coding upstream 356235 2674748 ~ 2678277 (+)
LOC103028117 crhr1,LOC108413653,LOC107662410,LOC108261365 coding upstream 913018 1844980 ~ 2121494 (+)
LOC103044572 NA coding upstream 1683592 1334340 ~ 1350920 (+)
LOC103026062 LOC108432079 coding downstream 129435 3165049 ~ 3216189 (+)
LOC103025752 kpna2,LOC108432045,LOC108261381 coding downstream 184315 3219929 ~ 3227171 (+)
LOC103025443 smurf2,LOC108432078,LOC108254810,LOC107748797,LOC107695141,LOC105891874 coding downstream 192844 3228458 ~ 3326996 (+)
LOC103024726 LOC103024726,LOC108432077,LOC108257112,LOC107583258,LOC107748799,LOC103360002,LOC105013158 coding downstream 297265 3332879 ~ 3342234 (+)
LOC111191052 NA coding downstream 310831 3346445 ~ 3357240 (+)
G297126 NA non-coding upstream 13355 3020513 ~ 3021157 (+)
G297116 NA non-coding upstream 54141 2980093 ~ 2980371 (+)
G297063 NA non-coding upstream 102595 2929187 ~ 2931917 (+)
G297070 NA non-coding upstream 130977 2903076 ~ 2903535 (+)
G297065 NA non-coding upstream 143497 2890448 ~ 2891015 (+)
G297190 NA non-coding downstream 182057 3217671 ~ 3218609 (+)
G297203 NA non-coding downstream 270555 3306169 ~ 3312518 (+)
G297214 NA non-coding downstream 310480 3346094 ~ 3375734 (+)
G297217 NA non-coding downstream 313128 3348742 ~ 3410812 (+)
G297218 NA non-coding downstream 375642 3411256 ~ 3412085 (+)
G296790 tcap,LOC108413611 other upstream 1672577 1359112 ~ 1361935 (+)
LOC103044283 LOC103044283,LOC108412482 other upstream 1744092 1287516 ~ 1290420 (+)
G296679 tlk2,LOC108413572,LOC107660745 other upstream 1833724 1191763 ~ 1200788 (+)
mien1 mien1,sepw2a,LOC107566883 other upstream 2200454 826378 ~ 834058 (+)
LOC103026352 ndufa4l,LOC103026352,LOC108413413,LOC108260900,LOC107684646,LOC107590798,LOC103357383,LOC107582867 other upstream 2993621 36833 ~ 40891 (+)
LOC111191028 grb2b,grb2,LOC108432081,LOC107719324,LOC108256494,LOC107672691,LOC107672145,LOC107723603 other downstream 6818 3042432 ~ 3148603 (+)
LOC103030733 NA other downstream 514713 3550327 ~ 3640614 (+)
LOC103041102 LOC108440983,LOC108258030,LOC107718582,LOC107661664,LOC107715658,LOC107695723,LOC107550253 other downstream 1217402 4253016 ~ 4299447 (+)
znf653 znf653,LOC106601361,LOC107553636,LOC104961106,LOC103393609 other downstream 1384383 4419997 ~ 4434071 (+)
LOC111191039 NA other downstream 1615029 4650643 ~ 4675621 (+)

Expression


Co-expression Network