G297196


Basic Information

Item Value
gene id G297196
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NW_019172828.1
NCBI id APWO02000046.1
chromosome length 5964967
location 3267245 ~ 3272927 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU408707
ttttttttttttgacgaaagtgcaaagagaaagagagacagacagcctCGTGGTGACACGACCAGCGAGGTGAAGGGGTTAGAGCGACACAGGTAGCTCTAGAAGAATTAAAGAgaacctctctgaactgagcccAGTATACACTGTTCCCATAGAGGTTAAAGATAGAGAGCCACTTGGCAACTCTGAAGAGATTGTAAGAAAAACCGGCGTGGTCTTGCTTTCTGACAGGAATACTCAAGACTCTGCGCCGAGGAACCGGAAGGAAGCCCTTATAAGGTAGTGACACCAGCTGTTGTTAATCGCGCTGATTACCACCTGGCTTAGAGCGTGGCCTCCCTCTAGTGGTGGGAAG
>TU408708
ttttttttttttgacgaaagtgcaaagagaaagagagacagacagcctCGTGGTGACACGACCAGCGAGGTGAAGGGGTTAGAGCGACACAGGTAGCTCTAGAAGAATTAAAGAgaacctctctgaactgagcccAGTATACACTGTTCCCATAGAGGTTAAAGATAGAGAGCCACTTGGCAACTCTGAAGAGATTGTAAGAAAAACCGGCGTGGTCTTGCTTTCTGACAGGAATACTCAAGACTCTGCGCCGAGGAACCGGAAGGAAGCCCTTATAAGGTAGTGACACCAGCTGTTGTTAATCGCGCTGATTACCACCTGGCTTAGAGCGTGGCCTCCCTCTAGTGGTGGGAAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU408707 True 355 lncRNA 0.48 2 3267245 3272927
TU408708 False 355 lncRNA 0.48 2 3267245 3272927

Neighbor

gene id symbol gene type direction distance location
LOC103026382 LOC108432046,LOC107719342,LOC107602308,LOC107672125,LOC107672690 coding downstream 206528 3046230 ~ 3060717 (-)
LOC111191031 NA coding downstream 322131 2943850 ~ 2945114 (-)
mfsd6l NA coding downstream 773470 2489837 ~ 2493775 (-)
trnas-gcu_70 NA coding downstream 970718 2296446 ~ 2296527 (-)
trnas-gcu_69 NA coding downstream 970937 2296227 ~ 2296308 (-)
gcdh gcdh,LOC102209187,LOC102794743,LOC101471797,LOC107718595 coding upstream 381450 3654377 ~ 3675494 (-)
LOC103031051 NA coding upstream 407571 3680498 ~ 3699508 (-)
LOC111191029 NA coding upstream 494868 3767795 ~ 3781254 (-)
LOC111191032 NA coding upstream 627243 3900170 ~ 3901948 (-)
LOC103029048 NA coding upstream 641246 3914173 ~ 3931118 (-)
G297191 NA non-coding downstream 48636 3217520 ~ 3218609 (-)
G297189 NA non-coding downstream 51071 3214233 ~ 3216174 (-)
LOC111191041 NA non-coding downstream 99108 3154618 ~ 3168137 (-)
trnas-aga_44 NA non-coding downstream 105759 3161405 ~ 3161486 (-)
G297151 NA non-coding downstream 214104 3050530 ~ 3053141 (-)
G297209 NA non-coding upstream 32933 3305860 ~ 3312518 (-)
G297239 NA non-coding upstream 53925 3326852 ~ 3330983 (-)
G297241 ddx5,LOC103024726,LOC108432077,LOC107583258,LOC107723600,LOC107602339,LOC103393708,LOC100712452 non-coding upstream 65303 3338230 ~ 3342280 (-)
G297247 NA non-coding upstream 84729 3357656 ~ 3359095 (-)
LOC111191057 NA non-coding upstream 120221 3393148 ~ 3504242 (-)
G297195 kpna2,LOC108432045,LOC108261381 other downstream 40074 3224207 ~ 3227171 (-)
LOC103037146 NA other downstream 735743 2497215 ~ 2531502 (-)
LOC111191047 NA other downstream 1409423 1845913 ~ 1857822 (-)
LOC107197178 syngr1a,LOC108413620,LOC107582870,LOC107694963,LOC107727456,LOC107684634,LOC107725053,LOC107590782 other downstream 1878536 1371515 ~ 1388709 (-)
G297334 farsa,LOC106601350 other upstream 323560 3596487 ~ 3610695 (-)
elof1 elof1,LOC101167459 other upstream 1079688 4352615 ~ 4355768 (-)
G297720 NA other upstream 1092650 4365577 ~ 4366130 (-)
LOC103025426 zgc:158403,LOC108441004,LOC108258290,LOC107718630,LOC107661656,LOC107553678,LOC107695678 other upstream 1802564 5075491 ~ 5112720 (-)
LOC103032059 coro7,LOC108431934,LOC108276516,LOC107553663 other upstream 2199869 5472796 ~ 5655479 (-)

Expression


Co-expression Network