G297217


Basic Information

Item Value
gene id G297217
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NW_019172828.1
NCBI id APWO02000046.1
chromosome length 5964967
location 3348742 ~ 3410812 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU408750
tttttttttttttttttttttgtcattttttttggtccatgcCAAGAACCTGTCTGCACCGCATCCATTGGCCTGTGGCAGAATGTGCCAAAGAGTCGGCCTGCCTCTAACCGATAGCGAGTAACCAGGCAGTTCTCGTTGGCTACAGCTATTAAAGCAAAGCAAGCTCCTGATTGGACGGAGGGAACGGATCTCTCTGGTTTCCTTGGTTTTGCTCCTTCCACGTTGCTGAAACCGTGGTGAAACAGTGAGCGTGATGACCAGTCGAGAAGCTCCTTCAGCTCCTCTGGATTGTATTTTAAACCTTTAGACGATGAACTAGGTGTCAATGAACTTCTTAACAAAGGCCCCATGACTTTGTGGCGAGCTGGATCTTATTACTACACACTTCCTAACCAAGGAAGGGACGACACGGACTCATCCTGCTACTATGAAGGACGTTCAGGACCATGTAGCTTCACGTTTTACTTCACATTAGTTGGGAATCCATATCTACAAAGTGAAGCAATAACAGTACGGCCTCGCAGGTTCGTTCCAGCGTTCACTACACTTATCTCTGAGACTTGCAGTATTCCTGTGGAGAATATAGGCCTATATATGATGTAATTAAGAAGAAGAAACCGTAGGGGGAGAGATATTACGAGTATAAACAGTCTGAAATGTGATCTTGATCCATTTATTGTGAATTTATTGCAACTTTTTAAtgctgtgtattttttattgccaTTTGTGTTTCTGTACTTGCGGTCAAAGATAAGTGAAATAGAGtaagtgttattttttatgttagaCAAgatcttaagaaaaaaaaaatacattggtGCTCATGAGGTCAAATGGTTGTGATGGTCGAATGGTTCTCAATGGTTGTGATTGGTTCTGAATGAGTTTGAATGCAGGGAGTTGTGTTATGTTTCACCTTTAGGACTTTTAAACAGTGGCTGTGTTCCAATTGCGTACTGTGTACTAGTAATGCTAGCTTTTGGTTTTTTAGGTATGTAGTGTGTAGTCAATTGAGTATATTTAGGCCATTGTTCACAactttgtcccagaaataaatgcgataaacaatattgttgttatttaaaaaaaaataaagtttatatcaGTGgtataaaattgaataaaaatgcCATTTTAAGAGGAATtaggttttatttagtattaaaaatCAGACATTGCCAATTTTTTAACGCATAGGAGCCCAGACCCACCTCTCAGCATTGATGCCAAATTAAAGatttaatctgataaaaaaattaagggagcaaattttttttttttttttttttccccccattttctccccaatttacacggcccactcattaggactcccaggagggtgaagactaacacatgcttcctccgatacatgtgaagtcagccaccgcttcttttcgagctgctgctgatgcagcattactgagcagccagtgtgctcggaggaaagcacaacaGCTCGGctccagtacatcagctcacaggcgccctgtgctgcagacatcaccataggagtgatgtggggagagagcgccatctactgtacccactcggagggagcagggccaattgtgctccctctgagcgccggctcgaacctgcgacctcctgctcatagtggcagcgctttagaccactggaccactcggcgcctaggtttgttttttaatgtgggcacatttaaaaatttaagGGAAATTGTATTACTTgtcttttaacattttgttccaGAAATTAGCTCAATACTAGTTATAAggaatgtaaaacattaattttaagcttttttttttgttaaatggttaaaaaagatCTATAGAAGTTAATAATACATTGTGTTAAAAGTAGCTAATTATTTTATCTCCAAAACGAACACTAAACCACTCCTATATTCTGTAATAAATAGAagatatgaatgaatgaacacagattcacacactgtcatgtagtgatgctctcaggatggtCAGTAGGCTCAGGCTGTGTGTCACTTATAGACTTTAGGGCAGACAGAGAGCTGTTAGGaattttacacagcttttaaagggtctgtgaaacccatacatcaccatgGGCTCTTCTGGGTTAAgcgtaaataaataaagcgtAAACAGCACTGTTTTAGACAGTGAACACACCAGcttgttcatttttaatgggctggtgtggcgcagtggataacaccattgCCTActtgtgagctaccacatcatgtgggagactgggtgACTGACTATGCTGCACAACACCAatagtccttgggcaagactcctaacactacattggccctcctctgttacagaaataatccTGTAAGTCTCTCTGGATAAGAACATCAGCTAAATGCTGTCAATGTAAAATACTGGACTCTTTTAATAAAAGTAGCAGCTAGGCATTCTGGGACTgctttctacaaacattagtgaaagaatgggtctcaggctctcaggagctcagtaaactccagcactgtggtaccgtgataggatgcagcacctgtgcaaccagagtccagtcgtgaaatttcactactcactactaaatactccacagccaactgtcagagatattataacacagtggaagagactgagaACGACAGTGACTCtttgctctgtcagtgtaaaataacagagc

Function

GO:

id name namespace
GO:0048268 clathrin coat assembly biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU408750 True 2637 lncRNA 0.41 2 3348742 3410812

Neighbor

gene id symbol gene type direction distance location
LOC103024726 LOC103024726,LOC108432077,LOC108257112,LOC107583258,LOC107748799,LOC103360002,LOC105013158 coding upstream 6508 3332879 ~ 3342234 (+)
LOC103025443 smurf2,LOC108432078,LOC108254810,LOC107748797,LOC107695141,LOC105891874 coding upstream 21746 3228458 ~ 3326996 (+)
LOC103025752 kpna2,LOC108432045,LOC108261381 coding upstream 121571 3219929 ~ 3227171 (+)
LOC103026062 LOC108432079 coding upstream 132553 3165049 ~ 3216189 (+)
LOC111191042 LOC108432083 coding upstream 423557 2768664 ~ 2925185 (+)
ilf3 ilf3,LOC107659573 coding downstream 163821 3574633 ~ 3595371 (+)
farsa farsa coding downstream 185715 3596527 ~ 3620827 (+)
LOC111191046 NA coding downstream 234901 3645713 ~ 3651335 (+)
LOC103025262 LOC108432064,LOC108256459 coding downstream 293992 3704804 ~ 3766487 (+)
LOC103046751 LOC108432062 coding downstream 365711 3776523 ~ 3825640 (+)
G297203 NA non-coding upstream 36224 3306169 ~ 3312518 (+)
G297190 NA non-coding upstream 130133 3217671 ~ 3218609 (+)
G297128 NA non-coding upstream 313128 3034512 ~ 3035614 (+)
G297126 NA non-coding upstream 327585 3020513 ~ 3021157 (+)
G297116 NA non-coding upstream 368371 2980093 ~ 2980371 (+)
G297218 NA non-coding downstream 444 3411256 ~ 3412085 (+)
G297303 gcdh,LOC107653471,LOC107731476 non-coding downstream 250431 3661243 ~ 3664579 (+)
G297318 NA non-coding downstream 282886 3693698 ~ 3697530 (+)
G297369 NA non-coding downstream 367094 3777906 ~ 3783928 (+)
G297367 NA non-coding downstream 415956 3826768 ~ 3830199 (+)
LOC111191028 grb2b,grb2,LOC108432081,LOC107719324,LOC108256494,LOC107672691,LOC107672145,LOC107723603 other upstream 200139 3042432 ~ 3148603 (+)
G296790 tcap,LOC108413611 other upstream 1986807 1359112 ~ 1361935 (+)
LOC103044283 LOC103044283,LOC108412482 other upstream 2058322 1287516 ~ 1290420 (+)
G296679 tlk2,LOC108413572,LOC107660745 other upstream 2147954 1191763 ~ 1200788 (+)
mien1 mien1,sepw2a,LOC107566883 other upstream 2514684 826378 ~ 834058 (+)
LOC103030733 NA other downstream 139515 3550327 ~ 3640614 (+)
LOC103041102 LOC108440983,LOC108258030,LOC107718582,LOC107661664,LOC107715658,LOC107695723,LOC107550253 other downstream 842204 4253016 ~ 4299447 (+)
znf653 znf653,LOC106601361,LOC107553636,LOC104961106,LOC103393609 other downstream 1009185 4419997 ~ 4434071 (+)
LOC111191039 NA other downstream 1239831 4650643 ~ 4675621 (+)
LOC103033323 NA other downstream 2291700 5702512 ~ 5711874 (+)

Expression


Co-expression Network