G297218


Basic Information

Item Value
gene id G297218
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NW_019172828.1
NCBI id APWO02000046.1
chromosome length 5964967
location 3411256 ~ 3412085 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU408751
caaacttcatgtagcttcagattagttcatcactacacacctccaaactacatgtagcttcagcagagttcatcactacacacctccaaacttcatgtagcttcagggttcatcactacacacctccaacacaGGATAAGTCTTTGGGCAGTATAGTGTATGTTAATACATTCTGTGTACTAACCAGCTAAACCCACACTGCTAAGATTAGTACACATTCTATAGGTTatagtattagtgtgtagtgcacatttgggacacagccactGTGTCTTAACTGGAGGTTTGGTTGTAATGCACTTTACAATTTTAAGACCTTTTCAGCTGGATTGACTGACTGCAAggtttgtgtgagagagtgtgtttgagagagtgtgagagtgtgtaagaaAGAGCGCgaaagacagagaaagcgaAGCTGCCATGGAAGAGAAGAGTTGTACCCTGTGCACAAGTGTTAGAAAGATTCATGTGAATCAAAGAATCATTAAATGTGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU408751 True 497 lncRNA 0.41 2 3411256 3412085

Neighbor

gene id symbol gene type direction distance location
LOC103038127 LOC103358682 coding upstream 7693 3362434 ~ 3403563 (+)
LOC111191052 NA coding upstream 54016 3346445 ~ 3357240 (+)
LOC103024726 LOC103024726,LOC108432077,LOC108257112,LOC107583258,LOC107748799,LOC103360002,LOC105013158 coding upstream 69022 3332879 ~ 3342234 (+)
LOC103025443 smurf2,LOC108432078,LOC108254810,LOC107748797,LOC107695141,LOC105891874 coding upstream 84260 3228458 ~ 3326996 (+)
LOC103025752 kpna2,LOC108432045,LOC108261381 coding upstream 184085 3219929 ~ 3227171 (+)
ilf3 ilf3,LOC107659573 coding downstream 162548 3574633 ~ 3595371 (+)
farsa farsa coding downstream 184442 3596527 ~ 3620827 (+)
LOC111191046 NA coding downstream 233628 3645713 ~ 3651335 (+)
LOC103025262 LOC108432064,LOC108256459 coding downstream 292719 3704804 ~ 3766487 (+)
LOC103046751 LOC108432062 coding downstream 364438 3776523 ~ 3825640 (+)
G297217 NA non-coding upstream 444 3348742 ~ 3410812 (+)
G297214 NA non-coding upstream 35522 3346094 ~ 3375734 (+)
G297203 NA non-coding upstream 98738 3306169 ~ 3312518 (+)
G297190 NA non-coding upstream 192647 3217671 ~ 3218609 (+)
G297128 NA non-coding upstream 375642 3034512 ~ 3035614 (+)
G297303 gcdh,LOC107653471,LOC107731476 non-coding downstream 249158 3661243 ~ 3664579 (+)
G297318 NA non-coding downstream 281613 3693698 ~ 3697530 (+)
G297369 NA non-coding downstream 365821 3777906 ~ 3783928 (+)
G297367 NA non-coding downstream 414683 3826768 ~ 3830199 (+)
LOC111191051 NA non-coding downstream 453855 3865940 ~ 3886107 (+)
LOC111191028 grb2b,grb2,LOC108432081,LOC107719324,LOC108256494,LOC107672691,LOC107672145,LOC107723603 other upstream 262653 3042432 ~ 3148603 (+)
G296790 tcap,LOC108413611 other upstream 2049321 1359112 ~ 1361935 (+)
LOC103044283 LOC103044283,LOC108412482 other upstream 2120836 1287516 ~ 1290420 (+)
G296679 tlk2,LOC108413572,LOC107660745 other upstream 2210468 1191763 ~ 1200788 (+)
mien1 mien1,sepw2a,LOC107566883 other upstream 2577198 826378 ~ 834058 (+)
LOC103030733 NA other downstream 138242 3550327 ~ 3640614 (+)
LOC103041102 LOC108440983,LOC108258030,LOC107718582,LOC107661664,LOC107715658,LOC107695723,LOC107550253 other downstream 840931 4253016 ~ 4299447 (+)
znf653 znf653,LOC106601361,LOC107553636,LOC104961106,LOC103393609 other downstream 1007912 4419997 ~ 4434071 (+)
LOC111191039 NA other downstream 1238558 4650643 ~ 4675621 (+)
LOC103033323 NA other downstream 2290427 5702512 ~ 5711874 (+)

Expression


Co-expression Network