LOC111191057


Basic Information

Item Value
gene id LOC111191057
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NW_019172828.1
NCBI id APWO02000046.1
chromosome length 5964967
location 3393148 ~ 3504242 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU408796
CAGAAACGTGGACGCTTGTCCGGGTAAGGGGTGATGAGAGGAGCTGCTGCTTGCTGTATGTGATAACTGTGCTCCGTGCTGTATTTATTATGTGCAGttcacagtcctgcgatggattggcggcctgtccagggggTGTCCTGCCTTCTGCACGCGACCCTTAACGGATAAAGAGGGATGAACGCGGTTACGGGCCGAGGAAGAGGCTCTTAAAACGGAGGAGAAGAGCTCCTCCCAGACCGG
>XR_002649343.1
AGGGGTGATGAGAGGAGCTGCTGCTTGCTGTATGTGATAACTGTGCTCCGTGCTGTATTTATTATGTGCAGttcacagtcctgcgatggattggcggcctgtccagggggTGTCCTGCCTTCTGCACGCGACCCTTAACGGATAAAGAGGGATGAACGCGGTTACGGGCCGAGGAAGAGGCTCTTAAAACGGAGGAGAAGAGCTCCTCCCAGACCGGATGTTTTttcctttgaatttaataaagttttctctctttacatcattaatttagcttgttgtgtttttattatcactgtgcTTTTCATTTTACTATCACATCTGATATAGTGGGTCTGGgtaaattttacacttttattcgcaaataaataagaaacttATGGAGCATGTTATGTTTTAGCAATTAACTAAGCtacattaaatgatattaaaagaagaatgtaactgttgtgtta

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU408796 False 243 lncRNA 0.56 4 3393383 3504242
XR_002649343.1 True 452 lncRNA 0.40 3 3393148 3504025

Neighbor

gene id symbol gene type direction distance location
LOC103026382 LOC108432046,LOC107719342,LOC107602308,LOC107672125,LOC107672690 coding downstream 332431 3046230 ~ 3060717 (-)
LOC111191031 NA coding downstream 448034 2943850 ~ 2945114 (-)
mfsd6l NA coding downstream 899373 2489837 ~ 2493775 (-)
trnas-gcu_70 NA coding downstream 1096621 2296446 ~ 2296527 (-)
trnas-gcu_69 NA coding downstream 1096840 2296227 ~ 2296308 (-)
gcdh gcdh,LOC102209187,LOC102794743,LOC101471797,LOC107718595 coding upstream 150135 3654377 ~ 3675494 (-)
LOC103031051 NA coding upstream 176256 3680498 ~ 3699508 (-)
LOC111191029 NA coding upstream 263553 3767795 ~ 3781254 (-)
LOC111191032 NA coding upstream 395928 3900170 ~ 3901948 (-)
LOC103029048 NA coding upstream 409931 3914173 ~ 3931118 (-)
G297247 NA non-coding downstream 34053 3357656 ~ 3359095 (-)
G297241 ddx5,LOC103024726,LOC108432077,LOC107583258,LOC107723600,LOC107602339,LOC103393708,LOC100712452 non-coding downstream 50868 3338230 ~ 3342280 (-)
G297239 NA non-coding downstream 62165 3326852 ~ 3330983 (-)
G297209 NA non-coding downstream 80630 3305860 ~ 3312518 (-)
G297196 NA non-coding downstream 120221 3267245 ~ 3272927 (-)
G297282 NA non-coding upstream 3224 3507466 ~ 3507689 (-)
G297322 NA non-coding upstream 45732 3549974 ~ 3585287 (-)
G297330 NA non-coding upstream 66889 3571131 ~ 3630995 (-)
G297321 ilf3,LOC107731470,LOC107659573 non-coding upstream 70460 3574702 ~ 3577796 (-)
G297346 NA non-coding upstream 174724 3678966 ~ 3680252 (-)
G297195 kpna2,LOC108432045,LOC108261381 other downstream 165977 3224207 ~ 3227171 (-)
LOC103037146 NA other downstream 861646 2497215 ~ 2531502 (-)
LOC111191047 NA other downstream 1535326 1845913 ~ 1857822 (-)
LOC107197178 syngr1a,LOC108413620,LOC107582870,LOC107694963,LOC107727456,LOC107684634,LOC107725053,LOC107590782 other downstream 2004439 1371515 ~ 1388709 (-)
G297334 farsa,LOC106601350 other upstream 92245 3596487 ~ 3610695 (-)
elof1 elof1,LOC101167459 other upstream 848373 4352615 ~ 4355768 (-)
G297720 NA other upstream 861335 4365577 ~ 4366130 (-)
LOC103025426 zgc:158403,LOC108441004,LOC108258290,LOC107718630,LOC107661656,LOC107553678,LOC107695678 other upstream 1571249 5075491 ~ 5112720 (-)
LOC103032059 coro7,LOC108431934,LOC108276516,LOC107553663 other upstream 1968554 5472796 ~ 5655479 (-)

Expression


Co-expression Network