LOC103030733


Basic Information

Item Value
gene id LOC103030733
gene name NA
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NW_019172828.1
NCBI id APWO02000046.1
chromosome length 5964967
location 3550327 ~ 3640614 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU408827
CAGAGCAGCTCAGCAGCACACCGGGTCCATCCTGCGCTCCTCCAGAACCAGCAGAACCATGAGGGAGAACCTCCAGCCCAGAGATCCTCACTTTACCCCCACAGGAACTCACTTTCCTCTACAATGCGGAGTAAAACTGAGGGTTTAATCAGATCTCAGCCCTGGATTACTGTCTTTTACTGCTGTTCTGCTCTTCTGGATCTGTGTGATGATCTTCTTCAGGTGGAGGAATCAGCTTAACCAGGACTTAACCAGGATACCTCTCAAATGTTCTGCCCGCACTCCCTCAGTCTGGAGACCCAGACCAGCAACACCTCGGCCCTGACTGCCGCGGCGCCCGTCTCCAACCAGACGTCTGGGCCGGTCGGAATGGACCCAAAGGGCAACCAGACAAAGTCCGAGGATGCCACGTCTGCAATGAATCCCACGGCCGCTGGGCTCTCCATGACTCTGGGTGTTCTGTCCAACATCATCGCACTCTTCATCCTGTCCAAGGCCTACGCCCGCCTGCGCCGGCGCTCCAAGGCCACCTTCCTGCTCTTCGCCAGCTCGCTGGTGGCCACGGACTTCGCCGGACACATCATCCCAGGTGCTCTGGTGCTGCACCTGTACTCCAACGGCGTCAGCCAGGAGCGTAAAGACTCAGACGCCTGCTGCCTGCTTCTGGGTGGCAGCATGGTGTTCTTCGGCCTGTGCCCTCTGTTCCTGGGTTGCGCCATGGCGGCAGAGCGATGCCTTGGGGTTACCCGTCCACTCCTCCACGCCAGACTCGTTTCCACCACCAGAACTAAGATGGCAGTGGTGACGATCTGGCTGGTAGCGCTGGTGGTGGCATTGCTGCCCATTAGTAACCTTGGAGAATACACATATCAGTACCCGGGGACCTGGTGCTTCATCCGGGTGCTGAGGAGCTCGAAAGCGACAGACGTGGTgtttgtgctgctgttctcTGTGCTGGGGCTCACCTCGCTCGCTATGTCACTGGTGTGCA
>TU408832
AATACACAGTTTTCAATAATATCTCTATTATCATgatattgagttttttttatgatattattGTGCACAAGAAAATATGACACATCCTGCTGCAAATTCAAATTGCATTACCTGAGtacagcaacagagggagctctacATGCTGCAGAGTGTTATCATGTGACATAAGaaagctggaggcagagcgagacagagtgaggtagaggtcctgAGTAAAGGCTCACACCATTATTATCATACATCACATTTTTTGTCAATATCCTGCACCCCTAATTTGCATGCAAAGCACTTAGGCCACTCCCAAGTTGGAGGCCAAATCCACTTTAGAATCATCTAAAAATAAGCTAGAATTAGACtcctgtctcatgacttttgtccTGTTGTATGGAATCTATATCATCTTATCATGAGCACACTggtcagtgttcaacctcactcacgtaagatagcacctcacaacttatacatacAAGTGCAAGTTTTGTTCCCAAAGCCTTCCCCGTAGGTAgttttttttttccc
>TU408833
ataaattttaacatttttattagtataaataaaaactttaaaagagcTGTAATATGGAAATGAATAATTGCAGATTAGGGGTGAGCAATATGACcctatcaaaatatatttaaaatatttttagggtatttttaagataacaatattcttcttggcaatatgacaaagcATTGACTTTTTTAGTAATTTCaaaaatatactactgcaacaaaaacatataaaagtttttttattattaatataaaaatatatttaaaaaagtataaataaacttttcaaGTTCAGTCAGTAGAGACTTACCAAGaccctgattttgtataaaataataatagtatacgAACGAATATGAACAGTAATAACAATAAGCAAaaaaagcaaaaaaa
>XM_022664976.1
GAGGTGGAGCTCAGTAACAGAGCAGCTCAGCAGCACACCGGGTCCATCCTGCGCTCCTCCAGAACCAGCAGAACCATGAGGGAGAACCTCCAGCCCAGAGATCCTCACTTTACCCCCACAGGAACTCACTTTCCTCTACAATGCGGAGTAAAACTGAGGGTTTAATCAGATCTCAGCCCTGGATTACTGTCTTTTACTGCTGTTCTGCTCTTCTGGATCTGTGTGATGATCTTCTTCAGGTGGAGGAATCAGCTTAACCAGGACTTAACCAGGATACCTCTCAAATGTTCTGCCCGCACTCCCTCAGTCTGGAGACCCAGACCAGCAACACCTCGGCCCTGACTGCCGCGGCGCCCGTCTCCAACCAGACGTCTGGGCCGGTCGGAATGGACCCAAAGGGCAACCAGACAAAGTCCGAGGATGCCACGTCTGCAATGAATCCCACGGCCGCTGGGCTCTCCATGACTCTGGGTGTTCTGTCCAACATCATCGCACTCTTCATCCTGTCCAAGGCCTACGCCCGCCTGCGCCGGCGCTCCAAGGCCACCTTCCTGCTCTTCGCCAGCTCGCTGGTGGCCACGGACTTCGCCGGACACATCATCCCAGGTGCTCTGGTGCTGCACCTGTACTCCAACGGCGTCAGCCAGGAGCGTAAAGACTCAGACGCCTGCTGCCTGCTTCTGGGTGGCAGCATGGTGTTCTTCGGCCTGTGCCCTCTGTTCCTGGGTTGCGCCATGGCGGCAGAGCGATGCCTTGGGGTTACCCGTCCACTCCTCCACGCCAGACTCGTTTCCACCACCAGAACTAAGATGGCAGTGGTGACGATCTGGCTGGTAGCGCTGGTGGTGGCATTGCTGCCCATTAGTAACCTTGGAGAATACACATATCAGTACCCGGGGACCTGGTGCTTCATCCGGGTGCTGAGGAGCTCGAAAGCGACAGACGTGGTgtttgtgctgctgttctcTGTGCTGGGGCTCACCTCGCTCGCTATGTCACTGGTGTGCAATACAATAAGCGGGATTACTATActgtgttttctgttgctgcAGATCTTTGGGCTGATGTCAGTCAGACACTCCTACAGCAGCTCAGTTCCAGAGCAGGACCCCTACAGGTTCCTAATGGTGATGGGGGTCCGCCTGGCCTCCTACAACCAGATCCTGGACCCCTGGGTCTACATCCTGCTGCGGCGAGCCGTGCTGAGGAAGATCTACCGGCTGACCACCGGCCGCACCCACATACGGGGGAGCACCTTCCGCCGCTGGGAGATCAGCTCCTTCCAGAACTCAGAGAAGAACACCGTTAAACGGATTTAGAGGAGCATCGTTCTCCTCCGGACTGAGCTCTAGAGATCCTACCTTCATCGATCTTTACTGAAGAACTGAAGGTGTGGGAGGAGCGTGCAGAATCTGATGATCTGAGACGTGCCAACAGTTTAGTCTCACATCGGCGTCTCCTCTGCAGAGAGGCCGACTATCTTCTACTGAAATGTGAACAGAGATCATGGATCTGGATTTATAAAGCTCTTAAGAACCTCCTTATGATGGCCAAAGCCTGGTGAGGAACTGTACAGTGGGGTCCATAAGGCTGAGTCCAgcattaaaatgtgtataatttgtatttttgttatttaataccaagttttttttatttgagtcaTAGCTGTGcgaaaaatttatttatttttactatgaaCATAAGAGATTTCACGATAAACACTTTGAAAGAGCCGTAATATTGAACTGAATAATTgcaaattaggggtgggcaatatgaccctatcaaaatatatctacaatattttagggtatttttaaaatacaaatattcttcttataattttaagaatatactactgcgacaaaataaattttaacatttttattagtataaataaaaactttaaaagagcTGTAATATGGAAATGAATAATTGCAGATTAGGGGTGAGCAATATGACcctatcaaaatatatttaaaatatttttagggtatttttaagataacaatattcttcttggcaatatgacaaagcATTGACTTTTTTAGTAATTTCaaaaatatactactgcaacaaaaacatataaaagtttttttattattaatataaaaatatatttaaaaaagtataaataaacttttcaaGTTCAGTCAGTAGAGACTTACCAAGaccctgattttgtataaaataataatagtatacgAACGAATATGAACAGTAATAACAATAAGCAAccacaaaaaaatcagcatttttaGTGCTGCAAATTAATTgcaattataaacaaaaaattaaaaatagataatTAAACAAGTATAAATACACAGTTTTCAATAATATCTCTATTATCATgatattgagttttttttatgatattattGTGCACAAGAAAATATGACACATCCTGCTGCAAATTCAAATTGCATTACCTGAGtacagcaacagagggagctctacATGCTGCAGAGTGTTATCATGTGACATAAGaaagctggaggcagagcgagacagagtgaggtagaggtcctgAGTAAAGGCTCACACCATTATTATCATACATCACATTTTTTGTCAATATCCTGCACCCCTAATTTGCATGCAAAGCACTTAGGCCACTCCCAAGTTGGAGGCCAAATCCACTTTAGAATCATCTAAAAATAAGCTAGAATTAGACtcctgtctcatgacttttgtccTGTTGTATGGAATCTATATCATCTTATCATGAGCACACTggtcagtgttcaacctcactcacgtaagatagcacctcacaacttatacatacAAGTGCAAGTTTTGTTCCCAAAGCCTTCCCCGTAGGTAAAACTTacctaaagtttttttttcccgatttaaatgtaaaataaagcaaaacacaGGTTTTTAAGGTGGTCTCAGACTTTTGGACCCCACTATAAATGTCTTACTACGACTAATTAGGTTCTCATACATGctaaatgaaaaagaaatcGTGGCAAAGTGAAAATTCAGTGGATTAAAAGGTGAAAATGGCTCAAAGCTCTGGTTTTATTGTGATTTACCATTTACTTACCCATCAGGACGTCATGTCATTCAAGACCTTCTTACATATGTAAATATGTCCATATTGATGCTGAGTAAAGGCGGAGCTTTTACTCGTATTGTACAGTATTGTACTGTATCTGTAGGCAGTTGTACAGTGTCCTCATATCTGTGTATTTATTGCCTGTCGTTTGTTTCCCCAATTATGTGACTTGAACCAAAGCTATCTGATGTAAAAGCTGTTGAATGTAATATTGACCAATAAAggttaaaaaatgattaa

Function

GO: NA

KEGG:

id description
ko04060 Cytokine-cytokine receptor interaction
ko04062 Chemokine signaling pathway

RNA

RNA id representative length rna type GC content exon number start site end site
TU408827 False 991 TUCP 0.58 2 3550344 3559451
TU408832 False 522 lncRNA 0.39 2 3566875 3584353
TU408833 False 383 lncRNA 0.21 2 3566422 3640614
XM_022664976.1 True 3310 mRNA 0.43 3 3550327 3567863

Neighbor

gene id symbol gene type direction distance location
LOC103038127 LOC103358682 coding upstream 146764 3362434 ~ 3403563 (+)
LOC111191052 NA coding upstream 193087 3346445 ~ 3357240 (+)
LOC103024726 LOC103024726,LOC108432077,LOC108257112,LOC107583258,LOC107748799,LOC103360002,LOC105013158 coding upstream 208093 3332879 ~ 3342234 (+)
LOC103025443 smurf2,LOC108432078,LOC108254810,LOC107748797,LOC107695141,LOC105891874 coding upstream 223331 3228458 ~ 3326996 (+)
LOC103025752 kpna2,LOC108432045,LOC108261381 coding upstream 323156 3219929 ~ 3227171 (+)
LOC111191046 NA coding downstream 5099 3645713 ~ 3651335 (+)
LOC103025262 LOC108432064,LOC108256459 coding downstream 64190 3704804 ~ 3766487 (+)
LOC103046751 LOC108432062 coding downstream 135909 3776523 ~ 3825640 (+)
LOC103038737 plppr2a,LOC108440982,LOC108274416,LOC107550254,LOC107715659,LOC107695724,LOC107718583,LOC107661668,LOC106938566 coding downstream 439535 4080149 ~ 4159462 (+)
cnn1 cnn1,cnn1b,LOC107715638,LOC107718633 coding downstream 682497 4323111 ~ 4346597 (+)
G297218 NA non-coding upstream 138242 3411256 ~ 3412085 (+)
G297217 NA non-coding upstream 139515 3348742 ~ 3410812 (+)
G297214 NA non-coding upstream 174593 3346094 ~ 3375734 (+)
G297203 NA non-coding upstream 237809 3306169 ~ 3312518 (+)
G297190 NA non-coding upstream 331718 3217671 ~ 3218609 (+)
G297303 gcdh,LOC107653471,LOC107731476 non-coding downstream 20629 3661243 ~ 3664579 (+)
G297318 NA non-coding downstream 53084 3693698 ~ 3697530 (+)
G297369 NA non-coding downstream 137292 3777906 ~ 3783928 (+)
G297367 NA non-coding downstream 186154 3826768 ~ 3830199 (+)
LOC111191051 NA non-coding downstream 225326 3865940 ~ 3886107 (+)
LOC111191028 grb2b,grb2,LOC108432081,LOC107719324,LOC108256494,LOC107672691,LOC107672145,LOC107723603 other upstream 401724 3042432 ~ 3148603 (+)
G296790 tcap,LOC108413611 other upstream 2188392 1359112 ~ 1361935 (+)
LOC103044283 LOC103044283,LOC108412482 other upstream 2259907 1287516 ~ 1290420 (+)
G296679 tlk2,LOC108413572,LOC107660745 other upstream 2349539 1191763 ~ 1200788 (+)
mien1 mien1,sepw2a,LOC107566883 other upstream 2716269 826378 ~ 834058 (+)
LOC103041102 LOC108440983,LOC108258030,LOC107718582,LOC107661664,LOC107715658,LOC107695723,LOC107550253 other downstream 612402 4253016 ~ 4299447 (+)
znf653 znf653,LOC106601361,LOC107553636,LOC104961106,LOC103393609 other downstream 779383 4419997 ~ 4434071 (+)
LOC111191039 NA other downstream 1010029 4650643 ~ 4675621 (+)
LOC103033323 NA other downstream 2061898 5702512 ~ 5711874 (+)

Expression


Co-expression Network