G297318


Basic Information

Item Value
gene id G297318
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NW_019172828.1
NCBI id APWO02000046.1
chromosome length 5964967
location 3693698 ~ 3697530 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU408865
TCCGGCGGCTCGGTTTTTTCCGCATCGGCGGGTGCGTGCGCTGCGCGCGCTCATGGACCATTTCACAGACCATTTGAACTACCCAGGACATTGCCTAGGATGGCCCCACAAACTGCTAAAACTTTTGCCAGTCCTAGCCTTCCCTCCATGTTTGTTGTTCCTATGTGCATTCCAGTGTTAGTTCCTGTTACTGTTAGTATTCCTGTACCCCTGTCAAGTCATGTTATTGTGCCCATTCCAGTCACCGTGTTTATATCTATTCCTGTTAATGTATTGGTCCCGGTTCCCATGTCAAATCTCCTGTCAAGTCTTTTGTCCTGTCATTAGTCCAGTCTCTTGCGCTGTCCCCGGTCccgtccgttttttttttttcaggcctCTCTCTTCTGCCGGCTCCCGGGGTTTGGTTTTatgcgcctcgggagctgcgcatTAAGGAGTGGCTTCTGTCACGCTTTCATGTATTTCGTCTGTTTATTTACTCTCCTTGTGTTTATCCTGTGTCTCCTCCCCTGTGGCCTACCTgttttgtagctccgccctctcttcccaggtgtttcctgtttctagTCTGTGTCCGTTGGTATAAATAGTCCCCCTCTACTGGTTACCTTCGTCCGTGATGGTGCGTTGTTGACGTCAGTCAGGTTTCGTGATCCCCGTGTTTTCTCTgatctgtttcttgtttttcttttatgtatGTTAATAAATGTAACTCGCACTTGCGTCCGCCTCTGCGTCCTCTCCCTGTTCCTGCTCCTGACA
>TU408866
TCCGGCGGCTCGGTTTTTTCCGCATCGGCGGGTGCGTGCGCTGCGCGCGCTCATGGACCATTTCACAGACCATTTGAACTACCCAGGACATTGCCTAGGATGGCCCCACAAACTGCTAAAACTTTTGCCAGTCCTAGCCTTCCCTCCATGTTGTTTGTTGTTCCTATGTGCATTCCAGTGTTAGTTCCTGTTACTGTTAGTATTCCTGTACCCCTGTCAAGTCATGTTATTGTGCCCATTCCAGTCACCGTGTTTATATCTATTCCTGTTAATGTATTGGTCCCGGTTCCCATGTCAAATCTCCTGTCAAGTCTTTTGTCCTGTCATTAGTCCAGTCTCTTGCGCTGTCCCCGGTCccgtccgttttttttttttcaggcctCTCTCTTCTGCCGGCTCCCGGGGTTTGGTTTTatgcgcctcgggagctgcgcatTAAGGAGTGGCTTCTGTCACGCTTTCATGTATTTCGTCTGTTTATTTACTCTCCTTGTGTTTATCCTGTGTCTCCTCCCCTGTGGCCTACCTgttttgtagctccgccctctcttcccaggtgtttcctgtttctagTCTGTGTCCGTTGGTATAAATAGTCCCCCTCTACTGGTTACCTTCGTCCGTGATGGTGCGTTGTTGACGTCAGTCAGGTTTCGTGATCCCCGTGTTTTCTCTgatctgtttcttgtttttcttttatgtatGTTAATAAATGTAACTCGCACTTGCGTCCGCCTCTGCGTCCTCTCCCTGTTCCTGCTCCTGACA
>TU408867
TCCGGCGGCTCGGTTTTTTCCGCATCGGCGGGTGCGTGCGCTGCGCGCGCTCATGGACCATTTCACAGACCATTTGAACTACCCAGGACATTGCCTAGGATGGCCCCACAAACTGCTAAAACTTTTGCCAGTCCTAGCCTTCCCTCCATGTTTGTTGTTCCTATGTGCATTCCAGTGTTAGTTCCTGTTACTGTTAGTATTCCTGTACCCCTGTCAAGTCATGTTATTGTGCCCATTCCAGTCACCGTGTTTATATCTATTCCTGTTAATGTATTGGTCCCGGTTCCCATGTCAAATCTCCTGTCAAGTCTTTTGTCCTGTCATTAGTCCAGTCTCTTGCGCTGTCCCCGGTCccgtccgttttttttttttcaggcctCTCTCTTCTGCCGGCTCCCGGGGTTTGGTTTTatgcgcctcgggagctgcgcatTAAGGAGTGGCTTCTGTCACGCTTTCATGTATTTCGTCTGTTTATTTACTCTCCTTGTGTTTATCCTGTGTCTCCTCCCCTGTGGCCTACCTgttttgtagctccgccctctcttcccaggtgtttcctgtttctagTCTGTGTCCGTTGGTATAAATAGTCCCCCTCTACTGGTTACCTTCGTCCGTGATGGTGCGTTGTTGACGTCAGTCAGGTTTCGTGATCCCCGTGTTTTCTCTgatctgtttcttgtttttcttttatgtatGTTAATAAATGTAACTCGCACTTGCGTCCGCCTCTGCGTCCTCTCCCTGTTCCTGCTCCTGACA
>TU408868
TCCGGCGGCTCGGTTTTTTCCGCATCGGCGGGTGCGTGCGCTGCGCGCGCTCATGGACCATTTCACAGACCATTTGAACTACCCAGGACATTGCCTAGGATGGCCCCACAAACTGCTAAAACTTTTGCCAGTCCTAGCCTTCCCTCCATGTTTGTTGTTCCTATGTGCATTCCAGTGTTAGTTCCTGTTACTGTTAGTATTCCTGTACCCCTGTCAAGTCATGTTATTGTGCCCATTCCAGTCACCGTGTTTATATCTATTCCTGTTAATGTATTGGTCCCGGTTCCCATGTCAAATCTCCTGTCAAGTCTTTTGTCCTGTCATTAGTCCAGTCTCTTGCGCTGTCCCCGGTCccgtccgttttttttttttcaggcctCTCTCTTCTGCCGGCTCCCGGGGTTTGGTTTTatgcgcctcgggagctgcgcatTAAGGAGTGGCTTCTGTCACGCTTTCATGTATTTCGTCTGTTTATTTACTCTCCTTGTGTTTATCCTGTGTCTCCTCCCCTGTGGCCTACCTgttttgtagctccgccctctcttcccaggtgtttcctgtttctagTCTGTGTCCGTTGGTATAAATAGTCCCCCTCTACTGGTTACCTTCGTCCGTGATGGTGCGTTGTTGACGTCAGTCAGGTTTCGTGATCCCCGTGTTTTCTCTgatctgtttcttgtttttcttttatgtatGTTAATAAATGTAACTCGCACTTGCGTCCGCCTCTGCGTCCTCTCCCTGTTCCTGCTCCTGACA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU408865 False 765 lncRNA 0.49 2 3693698 3697530
TU408866 True 768 lncRNA 0.49 2 3693698 3697530
TU408867 False 765 lncRNA 0.49 2 3693698 3697530
TU408868 False 765 lncRNA 0.49 2 3693698 3697530

Neighbor

gene id symbol gene type direction distance location
LOC111191046 NA coding upstream 42363 3645713 ~ 3651335 (+)
farsa farsa coding upstream 72871 3596527 ~ 3620827 (+)
ilf3 ilf3,LOC107659573 coding upstream 98327 3574633 ~ 3595371 (+)
LOC103038127 LOC103358682 coding upstream 290135 3362434 ~ 3403563 (+)
LOC111191052 NA coding upstream 336458 3346445 ~ 3357240 (+)
LOC103025262 LOC108432064,LOC108256459 coding downstream 7274 3704804 ~ 3766487 (+)
LOC103046751 LOC108432062 coding downstream 78993 3776523 ~ 3825640 (+)
LOC103038737 plppr2a,LOC108440982,LOC108274416,LOC107550254,LOC107715659,LOC107695724,LOC107718583,LOC107661668,LOC106938566 coding downstream 382619 4080149 ~ 4159462 (+)
cnn1 cnn1,cnn1b,LOC107715638,LOC107718633 coding downstream 625581 4323111 ~ 4346597 (+)
tmem205 tmem205 coding downstream 659457 4356987 ~ 4363604 (+)
G297303 gcdh,LOC107653471,LOC107731476 non-coding upstream 29119 3661243 ~ 3664579 (+)
G297218 NA non-coding upstream 281613 3411256 ~ 3412085 (+)
G297217 NA non-coding upstream 282886 3348742 ~ 3410812 (+)
G297214 NA non-coding upstream 317964 3346094 ~ 3375734 (+)
G297203 NA non-coding upstream 381180 3306169 ~ 3312518 (+)
G297369 NA non-coding downstream 80376 3777906 ~ 3783928 (+)
G297367 NA non-coding downstream 129238 3826768 ~ 3830199 (+)
LOC111191051 NA non-coding downstream 168410 3865940 ~ 3886107 (+)
G297377 NA non-coding downstream 189169 3886699 ~ 3988115 (+)
G297387 NA non-coding downstream 243026 3940556 ~ 3954908 (+)
LOC103030733 NA other upstream 53084 3550327 ~ 3640614 (+)
LOC111191028 grb2b,grb2,LOC108432081,LOC107719324,LOC108256494,LOC107672691,LOC107672145,LOC107723603 other upstream 545095 3042432 ~ 3148603 (+)
G296790 tcap,LOC108413611 other upstream 2331763 1359112 ~ 1361935 (+)
LOC103044283 LOC103044283,LOC108412482 other upstream 2403278 1287516 ~ 1290420 (+)
G296679 tlk2,LOC108413572,LOC107660745 other upstream 2492910 1191763 ~ 1200788 (+)
LOC103041102 LOC108440983,LOC108258030,LOC107718582,LOC107661664,LOC107715658,LOC107695723,LOC107550253 other downstream 555486 4253016 ~ 4299447 (+)
znf653 znf653,LOC106601361,LOC107553636,LOC104961106,LOC103393609 other downstream 722467 4419997 ~ 4434071 (+)
LOC111191039 NA other downstream 953113 4650643 ~ 4675621 (+)
LOC103033323 NA other downstream 2004982 5702512 ~ 5711874 (+)

Expression


Co-expression Network