G297330


Basic Information

Item Value
gene id G297330
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NW_019172828.1
NCBI id APWO02000046.1
chromosome length 5964967
location 3571131 ~ 3630995 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU408886
ctatCTTCTGAATATTTCCCTTTAAAATGGTTCAGTTGCATTATGAATTGCGATGATAAGCCCAGAGTAAGAacaatatttttcatttctgatatttttgtGACAGACAAGACAGCAAAAGTAgtactttattaaatatatcatgGCTAGATCAGTGATAAATGGAACTTACTGTATAGACCACTGTTGGAGGCTGTATTTGGCAGGATTGGATTGGGTGAATACTAGTAGCTAACTCTACTAAATTCTACTGAACTCTATTTCAGAGTAAATCGtcgctgttcaatgaaaaacaagtatttccatttttgtcgatttttagtttactacataatttgaacagacaaactgtcccttacactgtgccaacattttttgataaacggaccaatagaaatacattatcttccattaaaagtttacaaggttttttctctcccctgtaaagttgcttttttgTAGATAAGtgttggacagcgacgatatgcagaTCTGTTGGTTGAGACAGTGCACCTGTGGAAAGGCTGCCGCACACCGGACCACGCCGAGTAACAAGTAACGAAGTGCTGAAATGAGAGCACTGAAGACTGAGGACGTGTCTATATTGAAGACGTTGTGGTATTGCAAGCTGACAACATTTGAATGGAGCCTAAATTTATTATAATCTAATAGAATCAGTTCATTGATCAGCTTCTCCTTTTTAATAGAGCCCCTGAGGGTGTTTCTTCTGAATAAAGTGTCAATAAGACGTCAATAAATTGTGTAAAACCTGATTACTCCAACTGTCTGTATTGTAATATTggaatttttgcattttatgaACATTTCCAAAGTCCAAAAGTCATAAATTACACtaaaattaaacagtttttttttttttttttggctgtgtCTTGGAATCTAGTAAAGTGCTACCACTgctatatgaaaaaaatattggaggaaacactgcaatatgTCAAATTATCATAATCATTTATCATTGTTGATTATCAACTTAACTTAATCAGTGATACACCAAAAGTGCTTTATTTAGCAAATTTTCAGCTGCTAAATGTTTGATGCATCCCACAgcaaaatgatatatttttgttgtatcattttgtcttttatttattgtaattaaattgcGTCACAGAGAAATTGACCTACCGtcattttcgcactataaggcgcacttaaaatcagtttattttcccaaaaatcgaccaATCAGGTATTAAGGTATTAATGGCAAGTGCTAACATCCATTTCCctatttagaggtgagtattttcggACTGTAGCATGCTCCTAAGATagcagctagcactgctggagcagcattagcattacccgctaactgcacttgctatttccctgtttagaggtgaatatttttggactgtagcctggagctactttgagctggataacggtgtaaaaagccatttatcgggcaaaatatgccccgataTGGCCTTTGTATATAATGATAAAATGACTGGATCTCAGACAGCTGCAAGAGAGGAGATGGGCTATTaaatcaaaggtaagtactttatATCATGTATTACTACAACAAGAGTCCATTTTACACccaggagttctcctttaagggtAACAATATGACTACTTCATAACTTTCTGTGCCAATAAACCAAAAAGCATGCTGTAACAATGCAAACAAACCATCTTACATCTTACATACACAGACAAGCATCACCTCACACTGATTGCAGATCTCACCGCTTCTGCATGCTTCCTTACATCATCCTACATGTCTATCAGACTCAGTTCCTCCATCACTGGGACACAGGCAGATGATTGAGTAGAGTATCTGAGAGTTTTTGGTGAGGAATACACAGAGCGTAACAGCGTGGACCAATCCAGAATGCTTATTGAATTCATGAGGTCTGAGTATGAAAGGGTCCTGAAGAGACGGGCTTAAGGGTCCCTGAGTCCACGTTAAGAGTCCAGGCGGCACACCGGACTGTCGTACACCATCTGCAGGTTCACTTTGTGCCCCACCAGCTCACGGATGTTGTTGATGCCGTATTTGATCATG
>TU408887
ctatCTTCTGAATATTTCCCTTTAAAATGGTTCAGTTGCATTATGAATTGCGATGATAAGCCCAGAGTAAGAacaatatttttcatttctgatatttttgtGACAGACAAGACAGCAAAAGTAgtactttattaaatatatcatgGCTAGATCAGTGATAAATGGAACTTACTGTATAGACCACTGTTGGAGGCTGTATTTGGCAGGATTGGATTGGGTGAATACTAGTAGCTAACTCTACTAAATTCTACTGAACTCTATTTCAGAGTAAATCGtcgctgttcaatgaaaaacaagtatttccatttttgtcgatttttagtttactacataatttgaacagacaaactgtcccttacactgtgccaacattttttgataaacggaccaatagaaatacattatcttccattaaaagtttacaaggttttttctctcccctgtaaagttgcttttttgTAGATAAGtgttggacagcgacgatatgcagaTCTGTTGGTTGAGACAGTGCACCTGTGGAAAGGCTGCCGCACACCGGACCACGCCGAGTAACAAGTAACGAAGTGCTGAAATGAGAGCACTGAAGACTGAGGACGTGTCTATATTGAAGACGTTGTGGTATTGCAAGCTGACAACATTTGAATGGAGCCTAAATTTATTATAATCTAATAGAATCAGTTCATTGATCAGCTTCTCCTTTTTAATAGAGCCCCTGAGGGTGTTTCTTCTGAATAAAGTGTCAATAAGACGTCAATAAATTGTGTAAAACCTGATTACTCCAACTGTCTGTATTGTAATATTggaatttttgcattttatgaACATTTCCAAAGTCCAAAAGTCATAAATTACACtaaaattaaacagttttttttttatttttttttttttttttt
>TU408888
ctcgttttaaatgtcagggctctccggattctaaaAAGtcggtgtggagctactttgagctggataacggtgtaaaaagccatttatcgggcaaaatatgccccgataTGGCCTTTGTATATAATGATAAAATGACTGGATCTCAGACAGCTGCAAGAGAGGAGATGGGCTATTaaatcaaaggtaagtactttatATCATGTATTACTACAACAAGAGTCCATTTTACACccaggagttctcctttaagggtAACAATATGACTACTTCATAACTTTCTGTGCCAATAAACCAAAAAGCATGCTGTAACAATGCAAACAAACCATCTTACATCTTACATACACAGACAAGCATCACCTCACACTGATTGCAGATCTCACCGCTTCTGCATGCTTCCTTACATCATCCTACATGTCTATCAGACTCAGTTCCTCCATCACTGGGACACAGGCAGATGATTGAGTAGAGTATCTGAGAGTTTTTGGTGAGGAATACACAGAGCGTAACAGCGTGGACCAATCCAGAATGCTTATTGAATTCATGAGGTCTGAGTATGAAAGGGTCCTGAAGAGACGGGCTTAAGGGTCCCTGAGTCCACGTTAAGAGTCCAGGCGGCACACCGGACTGTCGTACACCATCTGCAGGTTCACTTTGTGCCCCACCAGCTCACGGATGTTGTTGATGCCGTATTTGATCATG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU408886 True 2047 lncRNA 0.38 2 3618006 3620787
TU408887 False 896 lncRNA 0.34 2 3571131 3620787
TU408888 False 699 lncRNA 0.44 2 3618006 3630995

Neighbor

gene id symbol gene type direction distance location
LOC103026382 LOC108432046,LOC107719342,LOC107602308,LOC107672125,LOC107672690 coding downstream 510414 3046230 ~ 3060717 (-)
LOC111191031 NA coding downstream 626017 2943850 ~ 2945114 (-)
mfsd6l NA coding downstream 1077356 2489837 ~ 2493775 (-)
trnas-gcu_70 NA coding downstream 1274604 2296446 ~ 2296527 (-)
trnas-gcu_69 NA coding downstream 1274823 2296227 ~ 2296308 (-)
gcdh gcdh,LOC102209187,LOC102794743,LOC101471797,LOC107718595 coding upstream 23382 3654377 ~ 3675494 (-)
LOC103031051 NA coding upstream 49503 3680498 ~ 3699508 (-)
LOC111191029 NA coding upstream 136800 3767795 ~ 3781254 (-)
LOC111191032 NA coding upstream 269175 3900170 ~ 3901948 (-)
LOC103029048 NA coding upstream 283178 3914173 ~ 3931118 (-)
G297282 NA non-coding downstream 63442 3507466 ~ 3507689 (-)
LOC111191057 NA non-coding downstream 66889 3393148 ~ 3504242 (-)
G297274 NA non-coding downstream 91635 3478516 ~ 3479496 (-)
G297264 NA non-coding downstream 159083 3411262 ~ 3412048 (-)
G297247 NA non-coding downstream 212036 3357656 ~ 3359095 (-)
G297346 NA non-coding upstream 47971 3678966 ~ 3680252 (-)
G297348 NA non-coding upstream 52156 3683151 ~ 3684593 (-)
G297349 NA non-coding upstream 62734 3693729 ~ 3697520 (-)
G297426 NA non-coding upstream 147060 3778055 ~ 3783713 (-)
G297433 NA non-coding upstream 179309 3810304 ~ 3840313 (-)
G297195 kpna2,LOC108432045,LOC108261381 other downstream 343960 3224207 ~ 3227171 (-)
LOC103037146 NA other downstream 1039629 2497215 ~ 2531502 (-)
LOC111191047 NA other downstream 1713309 1845913 ~ 1857822 (-)
LOC107197178 syngr1a,LOC108413620,LOC107582870,LOC107694963,LOC107727456,LOC107684634,LOC107725053,LOC107590782 other downstream 2182422 1371515 ~ 1388709 (-)
elof1 elof1,LOC101167459 other upstream 721620 4352615 ~ 4355768 (-)
G297720 NA other upstream 734582 4365577 ~ 4366130 (-)
LOC103025426 zgc:158403,LOC108441004,LOC108258290,LOC107718630,LOC107661656,LOC107553678,LOC107695678 other upstream 1444496 5075491 ~ 5112720 (-)
LOC103032059 coro7,LOC108431934,LOC108276516,LOC107553663 other upstream 1841801 5472796 ~ 5655479 (-)
G297905 NA other upstream 1971093 5602088 ~ 5602948 (-)

Expression


Co-expression Network