G297334 (farsa,LOC106601350)


Basic Information

Item Value
gene id G297334
gene name farsa,LOC106601350
gene type unknown
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NW_019172828.1
NCBI id APWO02000046.1
chromosome length 5964967
location 3596487 ~ 3610695 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU408892
TCTGGAGCCACACCCATCGCCTCGAAGTTATAGGGCTTAAACTTCTTGTCCCTCCAGCTCCCaCTGGCTATCATCTCTGGGGTGAGTTCTGTCTCCTGTTTGGTGATGGTGGTGCTGAAGTTTCTGCCTTTGGTGATCCAGTAGGACTTGATTGTTACTTCTGAGAGCAGTTTGCGTTTCTTCAGCTcattcttctccttctcctccagcTGAGAGGACTTGCCATTCTTCACCAGCTGCAGCTTCTCCCTCACTGTGTCTTCAATACTCTCCACCGTTCTGAAAACACGAGGGCCTCCTTCGTGAGCTTTATCCAGGCGGATCCATTTGTTGGACATGGCCTTGCTGAAGCCCACTTTACCACTGGGCAGTTTCATGAGCTGGCTCTGGGGCAGACCCTCTTCAGGAATGGCATTAAACACACGGGCCTCGTGGCTCCCCTGCTCAGatatctctctcccctctccgGTCAGCTCCCAGTGTTTGGAGGAACGCTGCGTCGCCTCAATCACCTCCCCCAGCGCCTGCAGGCTCTTCACCGCCCCGACCACCGCCTGGTGCTCCACGCCAAGCTCTCCCACCGCGTCCTGGCTGTCTAACCCGCCATCCACCTTCTCCACCAGCCGCAGCAGCGACTCCAGCAGCCCGCTGTCCGCCATGCTGATCCCTGCTAGCCTAGCACTCActcacactgagagagagagcggaacTGACGACAGACCGCGGCGGCGGG

Function

symbol description
farsa Predicted to enable phenylalanine-tRNA ligase activity. Predicted to be involved in phenylalanyl-tRNA aminoacylation and protein heterotetramerization. Predicted to act upstream of or within tRNA aminoacylation and translation. Predicted to be part of phenylalanine-tRNA ligase complex. Predicted to be active in cytosol. Orthologous to human FARSA (phenylalanyl-tRNA synthetase subunit alpha).

NR:

description
PREDICTED: phenylalanine--tRNA ligase alpha subunit

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU408892 True 733 TUCP 0.58 6 3596487 3610695

Neighbor

gene id symbol gene type direction distance location
LOC103026382 LOC108432046,LOC107719342,LOC107602308,LOC107672125,LOC107672690 coding downstream 535770 3046230 ~ 3060717 (-)
LOC111191031 NA coding downstream 651373 2943850 ~ 2945114 (-)
mfsd6l NA coding downstream 1102712 2489837 ~ 2493775 (-)
trnas-gcu_70 NA coding downstream 1299960 2296446 ~ 2296527 (-)
trnas-gcu_69 NA coding downstream 1300179 2296227 ~ 2296308 (-)
gcdh gcdh,LOC102209187,LOC102794743,LOC101471797,LOC107718595 coding upstream 43682 3654377 ~ 3675494 (-)
LOC103031051 NA coding upstream 69803 3680498 ~ 3699508 (-)
LOC111191029 NA coding upstream 157100 3767795 ~ 3781254 (-)
LOC111191032 NA coding upstream 289475 3900170 ~ 3901948 (-)
LOC103029048 NA coding upstream 303478 3914173 ~ 3931118 (-)
G297322 NA non-coding downstream 11200 3549974 ~ 3585287 (-)
G297321 ilf3,LOC107731470,LOC107659573 non-coding downstream 18691 3574702 ~ 3577796 (-)
G297282 NA non-coding downstream 88798 3507466 ~ 3507689 (-)
LOC111191057 NA non-coding downstream 92245 3393148 ~ 3504242 (-)
G297274 NA non-coding downstream 116991 3478516 ~ 3479496 (-)
G297346 NA non-coding upstream 68271 3678966 ~ 3680252 (-)
G297348 NA non-coding upstream 72456 3683151 ~ 3684593 (-)
G297349 NA non-coding upstream 83034 3693729 ~ 3697520 (-)
G297426 NA non-coding upstream 167360 3778055 ~ 3783713 (-)
G297433 NA non-coding upstream 199609 3810304 ~ 3840313 (-)
G297195 kpna2,LOC108432045,LOC108261381 other downstream 369316 3224207 ~ 3227171 (-)
LOC103037146 NA other downstream 1064985 2497215 ~ 2531502 (-)
LOC111191047 NA other downstream 1738665 1845913 ~ 1857822 (-)
LOC107197178 syngr1a,LOC108413620,LOC107582870,LOC107694963,LOC107727456,LOC107684634,LOC107725053,LOC107590782 other downstream 2207778 1371515 ~ 1388709 (-)
elof1 elof1,LOC101167459 other upstream 741920 4352615 ~ 4355768 (-)
G297720 NA other upstream 754882 4365577 ~ 4366130 (-)
LOC103025426 zgc:158403,LOC108441004,LOC108258290,LOC107718630,LOC107661656,LOC107553678,LOC107695678 other upstream 1464796 5075491 ~ 5112720 (-)
LOC103032059 coro7,LOC108431934,LOC108276516,LOC107553663 other upstream 1862101 5472796 ~ 5655479 (-)
G297905 NA other upstream 1991393 5602088 ~ 5602948 (-)

Expression


Co-expression Network