G297367


Basic Information

Item Value
gene id G297367
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NW_019172828.1
NCBI id APWO02000046.1
chromosome length 5964967
location 3826768 ~ 3830199 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU408936
aacaaaagtcaattttacaccagagttctcctttaagggaCTTAAGGGTTGAGGCTGAACTGTCTCTGAACGTTCAGAAGACGTCCTGACGCCTGTTTTGACCTCGTAACAGAGGTCTATTGTCTGCAGTGAGGTATTCAGCTCCTCGAGGCCTCGCTCTTTTGATGAAGATCACATGgcagagcagcagaaacagGCCGCCCAGAAGCTAAATGACTGTTGAGGTAAAGCCATGCTGGATGGATTacgtgcacaaacacacactcccgagTGTATGTGTGAACATGCAGAAACTCAACATATTCAGCTGAACTGATGTACTAACCATTGCTTTTGGGGGTTAGTATAGAGCAGGTAAGGCAGAGGAGGTCTGGACTGAAATAATGGAGTAAATATATACTGTGTAATGCATTATATATGGAAGGTCATTTATGCAGTGAGTGTCTTTTTATCCTCACCTTCACAAAAAAGGCACTTTTCATCACATatacagaatttaaaaaatatataaaaaaaatttggacacaccttaaattcagtgtttttttcattactttttaaagtgttctgcattgtagattaatactaaaattagtgcaacaattagtcgatataatcaatGTCAATTCTTTCAATTCATCGATtacaaatttcattgtaaaataaatggttAATTTGTAGCAGTACTGGATTACActaagtgctggggacagaggTGCAATAAAAGATGGGAAAGTAAatgactcactcacacagtttacactcaatttaacagtctgtgtctccaaaagtgcccaaacaccacataatacatatttactcactaaataatcagtactttccacgtttaaacaatatataggCATTTAAATCTCATGATCAGCTGTTGCTATTGTTTTTATAGATGGagataaaaactaaaatcatccaaactatgaacaaaagtgttgaacaaaccagaatatgttttgtattttagattcttcaaagtagcacctcttttttagatgactttagttttgaacatctctgctgcaggattttctcagtcaagtttatgaggtagagtcagctggaattcaggctttcagttaacagctgtgctgaactcatcaagagttaattacttgaatttcttgtctcttaataatgtgtttgagagcatcagttaaagtaaagtagtgaagaggtagagttactttgcaaaaagtaattagttgtagttactagttactcctccaaaaaagtaactaactgagttactccactataaaagtaagtagttaccagtaaaagtaactattgcttTTCATGCATGAATGAATAGGATGCGTTATGGTGGACGGGGAGAGGATGCGTCTTTCTTGCGGGTGCGCCGCACTAACGCTCAAATTTGATTTCAAGTCACCGGCCACAAAATATCGCTCTGTGGGCCGTGATTTTGAGATCCCTGATAAAAGTGCTCACTACAGACTACTGTCGTCCTCTGGGGATGAGCCTGCGGACCCCTAGAGGTGCTTCGCGGTTGAGAAACCCTGGTTTATATCATCGTCCGCGCAAAGtcagaaaaaaagttaatagagctgctaaagtaacgtgcagtagcGGTGTGTCGAAAATgataacggcgttatagtttcagtcagagtaattagttagattactccttactgaaaaagtaacagcgttagtaatgcagtttatttaaacgtcgttactcccatcactggttacaggtatacagtgaatagctctgtttgagtaatgttctaatccagattatgagaagcaagaactactcaaataagtaaagaaaagtaaaaaatgactttaagaaatgaaggtcagtcaataaaaaagaacattttaagaaattttgaaagtatcctcaagtgcagtcacaaaaaagaccatcagaaatgtaatgatgatgaaactggctctcatcaggactgcaacagaaaagaaagagcaataGATACCTTTGAGTAACCAGCTCCAgtctttagtattcatttaagatgtagaattttttttaataaaaacattgaataagaaggtgtgtccaaacttaacATGActtttaatcataataatatgataatatgaCTTCCTCAGTCAAACACCAAACACAAAAGTGCTTTCTGCCATTTCCAGATCATTTGGAATCATTTTGGTTgctaaatatttggtgcatctctaTTCTAGACTATAGTTTTTGTCTACTGGTCATATTCTGTATGAACTGCGTGTTGTGAAGATAAACGCAGGTCTGATTAATGCAGGACTTTCTGTTCAGTAGATCAGAATGTTCTCACACAGTGCCGCGGCGCTGCAGGACGATGTTGGTCTCAGTTAGAGATGACTGCACCAACAGGAACGGTGGCATTCCACTGCCATAGTGACATAAAACCAGTTCCTGTGTGGTGCAGGACGTTACTGATGTACAGAAGAATTCCACAAATTTtacacagctctgaccaatcagcacAGAGATCATTCTCACGTGTGGTGACGcaggagatggtctgagacgcattaaaatcagatacaaatctgatcaattaaaccacttcaggacatgacctgcactgaaaaaaaatgatgagtaaaagttacttaaaaaaaatttctcaactttctgcattcgctttttttaagtaaatttaatttc

Function

GO:

id name namespace
GO:0022857 transmembrane transporter activity molecular_function
GO:0005215 transporter activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU408936 True 2674 lncRNA 0.37 2 3826768 3830199

Neighbor

gene id symbol gene type direction distance location
LOC103046751 LOC108432062 coding upstream 1128 3776523 ~ 3825640 (+)
LOC103025262 LOC108432064,LOC108256459 coding upstream 60281 3704804 ~ 3766487 (+)
LOC111191046 NA coding upstream 175433 3645713 ~ 3651335 (+)
farsa farsa coding upstream 205941 3596527 ~ 3620827 (+)
ilf3 ilf3,LOC107659573 coding upstream 231397 3574633 ~ 3595371 (+)
LOC103038737 plppr2a,LOC108440982,LOC108274416,LOC107550254,LOC107715659,LOC107695724,LOC107718583,LOC107661668,LOC106938566 coding downstream 249950 4080149 ~ 4159462 (+)
cnn1 cnn1,cnn1b,LOC107715638,LOC107718633 coding downstream 492912 4323111 ~ 4346597 (+)
tmem205 tmem205 coding downstream 526788 4356987 ~ 4363604 (+)
LOC103038197 rab3d,LOC108440987 coding downstream 537519 4367718 ~ 4392866 (+)
epor NA coding downstream 571441 4401640 ~ 4414691 (+)
G297369 NA non-coding upstream 42840 3777906 ~ 3783928 (+)
G297318 NA non-coding upstream 129238 3693698 ~ 3697530 (+)
G297303 gcdh,LOC107653471,LOC107731476 non-coding upstream 162189 3661243 ~ 3664579 (+)
G297218 NA non-coding upstream 414683 3411256 ~ 3412085 (+)
G297217 NA non-coding upstream 415956 3348742 ~ 3410812 (+)
LOC111191051 NA non-coding downstream 35741 3865940 ~ 3886107 (+)
G297377 NA non-coding downstream 56500 3886699 ~ 3988115 (+)
G297387 NA non-coding downstream 110357 3940556 ~ 3954908 (+)
G297394 NA non-coding downstream 181578 4011777 ~ 4133864 (+)
G297392 NA non-coding downstream 191361 4021560 ~ 4023631 (+)
LOC103030733 NA other upstream 186154 3550327 ~ 3640614 (+)
LOC111191028 grb2b,grb2,LOC108432081,LOC107719324,LOC108256494,LOC107672691,LOC107672145,LOC107723603 other upstream 678165 3042432 ~ 3148603 (+)
G296790 tcap,LOC108413611 other upstream 2464833 1359112 ~ 1361935 (+)
LOC103044283 LOC103044283,LOC108412482 other upstream 2536348 1287516 ~ 1290420 (+)
G296679 tlk2,LOC108413572,LOC107660745 other upstream 2625980 1191763 ~ 1200788 (+)
LOC103041102 LOC108440983,LOC108258030,LOC107718582,LOC107661664,LOC107715658,LOC107695723,LOC107550253 other downstream 422817 4253016 ~ 4299447 (+)
znf653 znf653,LOC106601361,LOC107553636,LOC104961106,LOC103393609 other downstream 589798 4419997 ~ 4434071 (+)
LOC111191039 NA other downstream 820444 4650643 ~ 4675621 (+)
LOC103033323 NA other downstream 1872313 5702512 ~ 5711874 (+)

Expression


Co-expression Network