G297392


Basic Information

Item Value
gene id G297392
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NW_019172828.1
NCBI id APWO02000046.1
chromosome length 5964967
location 4021560 ~ 4023631 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU408988
ctttttaaaaatttatttacaacatttttgAAGCAGATACATAGTAAAAATAAGgcaatttgtttattttaaaggttaaattacaaattgaaaatgtattaaaacagcattaaaatgggcgataaaagataaaacaatataacaatataatgtagtaaatctgtatatctgtatattcagtatatttcagtcatttccatttttttttcaatactacAGTGTGCCCAGCAGGGGGCGTCAATGATTTGCAGATTACACATACAAGGCACACATACAGTACGGTATGGTTTGCATATCCGCCTGACAACCAACTGTGGGAAAAACTCATATCAGCActgtaatgctttaaaaaaatctccGAAATATCAAATAAAGAACCCTTCATAActtgtcagtgtaaaaaaagtcatttaaatcatctcaattggtccatttatcatatAATTTGGACACCAGgttgaaaaaacaacaaaatggagatacaaaGCTCGCAAATGGTGACTCAAGTTGTGCAAATGTCTCTATCAGCTCCAGGAGCctggggttgtgggttcaattcccacTCTGTGTAGGTTTCTCCAGTTACCCAAAGCTACTGCCCCCCAAATTCCTTGTGCCCAATGTCTCAGGAAATAGCAGATAAGAAGACATAAGAAtaaagatacaaggtttttgcaacTCAtgaaattcatattcataaagttttaagagttcagaaatcagtattgggtggaataaccctggtttttaatcacagttttcatgcatcttggcatcatgttctcctccgccagtcttacacactgcttttggataactttatgctgctttactcccggtgcaaaaattcaagcagttcagtttggtggtttgatggtttgtgatcatccatcttcttcttgattatattccagaggttttcaatttggtaaaatcaaagaaactcgtcattttttaatttttccagagctgtatatatgcaatacacaatatacatacatatatatcatatatatttccTTTTGCTATTTGAGTAAGAACTggacttcagtcaatcctttcttttagtaaactttacttaattactgaatacaatattacctaattacaattacaacacatggatggcatgtaatacattatttttagtttactagtataaagaatgtattacatgccatccatgtgttgagacagtgtaatctgtgtgttttaactaaaaatatttacattttaggaattataatatattatttataataaattatttgagtaatattgtataaattaagtaattgtaattaggtaatattgtatgcagaaattaataaagtttactaaaagaaaggattgactgaagttcagttcacttatttactctgtgtaacatttaagtcttgaaactgagttgaagttacttaaatttatctgaaattaaatttacttaaaaaaaagcaaatgcagaaagttgcgaaactcatacttataatttttttcagtgaagGTTTTTGTCCAACGGCAGAGAAATGCAGGAGTGTCTGGTCGCTCACATGACGGAGCAACACTGGCAGGTCTTGTGTTTGGTCATTTCTCCGCCTCCTCTCGTTCTGTTCGACGATACATCTGGAGAAACCAGAGCCTGTATCTCCGGTTCCTGCTGGAAGCTGtgtgccgctgctgctgctgctgctctctgtTTTAAAGTCTGAggtgtttctttgtttccatCTAACGGAACGTCTTCAAAGATCTCGTCTTCAGGGTTTGAGCCGTGCTTTATAATTTCCACGTGTGGAAACTCCTCCACTCTTTGTGTCTCAGACTGTGTCTCAGTCTCAGTTCTGGCTGGATGTCTGTCCTGTTCCTCTATGTTTGTGGTGGCAGATCCTGCTGAATCTTCAGGGACTTCTTCTGTAGCTTCCGGAACGTCTGGTGTGTCGTTGGAAACGTGTGGTAGAGATTGTTGGGCTTCTGTTGGGTCCTCTGTTGAAACATCTTCAGAATCCATAATATCTGAGATGTTGTCCAGGTCATGCAGTCCCACGGATTCAC

Function

GO: NA

KEGG:

id description
ko04978 Mineral absorption

RNA

RNA id representative length rna type GC content exon number start site end site
TU408988 True 2052 lncRNA 0.36 2 4021560 4023631

Neighbor

gene id symbol gene type direction distance location
LOC103046751 LOC108432062 coding upstream 195920 3776523 ~ 3825640 (+)
LOC103025262 LOC108432064,LOC108256459 coding upstream 255073 3704804 ~ 3766487 (+)
LOC111191046 NA coding upstream 370225 3645713 ~ 3651335 (+)
farsa farsa coding upstream 400733 3596527 ~ 3620827 (+)
ilf3 ilf3,LOC107659573 coding upstream 426189 3574633 ~ 3595371 (+)
LOC103038737 plppr2a,LOC108440982,LOC108274416,LOC107550254,LOC107715659,LOC107695724,LOC107718583,LOC107661668,LOC106938566 coding downstream 56518 4080149 ~ 4159462 (+)
cnn1 cnn1,cnn1b,LOC107715638,LOC107718633 coding downstream 299480 4323111 ~ 4346597 (+)
tmem205 tmem205 coding downstream 333356 4356987 ~ 4363604 (+)
LOC103038197 rab3d,LOC108440987 coding downstream 344087 4367718 ~ 4392866 (+)
epor NA coding downstream 378009 4401640 ~ 4414691 (+)
G297377 NA non-coding upstream 33445 3886699 ~ 3988115 (+)
G297387 NA non-coding upstream 66652 3940556 ~ 3954908 (+)
LOC111191051 NA non-coding upstream 135453 3865940 ~ 3886107 (+)
G297367 NA non-coding upstream 191361 3826768 ~ 3830199 (+)
G297369 NA non-coding upstream 237632 3777906 ~ 3783928 (+)
G297398 NA non-coding downstream 1418 4025049 ~ 4025360 (+)
G297407 NA non-coding downstream 67280 4090911 ~ 4091300 (+)
G297405 NA non-coding downstream 103890 4127521 ~ 4166562 (+)
G297497 NA non-coding downstream 191664 4215295 ~ 4275823 (+)
G297516 NA non-coding downstream 329022 4352653 ~ 4355964 (+)
LOC103030733 NA other upstream 380946 3550327 ~ 3640614 (+)
LOC111191028 grb2b,grb2,LOC108432081,LOC107719324,LOC108256494,LOC107672691,LOC107672145,LOC107723603 other upstream 872957 3042432 ~ 3148603 (+)
G296790 tcap,LOC108413611 other upstream 2659625 1359112 ~ 1361935 (+)
LOC103044283 LOC103044283,LOC108412482 other upstream 2731140 1287516 ~ 1290420 (+)
G296679 tlk2,LOC108413572,LOC107660745 other upstream 2820772 1191763 ~ 1200788 (+)
LOC103041102 LOC108440983,LOC108258030,LOC107718582,LOC107661664,LOC107715658,LOC107695723,LOC107550253 other downstream 229385 4253016 ~ 4299447 (+)
znf653 znf653,LOC106601361,LOC107553636,LOC104961106,LOC103393609 other downstream 396366 4419997 ~ 4434071 (+)
LOC111191039 NA other downstream 627012 4650643 ~ 4675621 (+)
LOC103033323 NA other downstream 1678881 5702512 ~ 5711874 (+)

Expression


Co-expression Network