G297398


Basic Information

Item Value
gene id G297398
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NW_019172828.1
NCBI id APWO02000046.1
chromosome length 5964967
location 4025049 ~ 4025360 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU408998
attattctcagcactgcagtgattagcactgattagcatggtgtatggtggtgtatgaggtgttagtgtgtgttgagctggtggtacagtgagtggatcagatgcagcagtgattagcactgattagcatggtgtatggtggtgtatgaggtgttagtgtgtgttgagctggtggtacagtgagtggatcagatgcagcagcagtgctgctggagttttta

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU408998 True 221 lncRNA 0.47 2 4025049 4025360

Neighbor

gene id symbol gene type direction distance location
LOC103046751 LOC108432062 coding upstream 199409 3776523 ~ 3825640 (+)
LOC103025262 LOC108432064,LOC108256459 coding upstream 258562 3704804 ~ 3766487 (+)
LOC111191046 NA coding upstream 373714 3645713 ~ 3651335 (+)
farsa farsa coding upstream 404222 3596527 ~ 3620827 (+)
ilf3 ilf3,LOC107659573 coding upstream 429678 3574633 ~ 3595371 (+)
LOC103038737 plppr2a,LOC108440982,LOC108274416,LOC107550254,LOC107715659,LOC107695724,LOC107718583,LOC107661668,LOC106938566 coding downstream 54789 4080149 ~ 4159462 (+)
cnn1 cnn1,cnn1b,LOC107715638,LOC107718633 coding downstream 297751 4323111 ~ 4346597 (+)
tmem205 tmem205 coding downstream 331627 4356987 ~ 4363604 (+)
LOC103038197 rab3d,LOC108440987 coding downstream 342358 4367718 ~ 4392866 (+)
epor NA coding downstream 376280 4401640 ~ 4414691 (+)
G297392 NA non-coding upstream 1418 4021560 ~ 4023631 (+)
G297377 NA non-coding upstream 36934 3886699 ~ 3988115 (+)
G297387 NA non-coding upstream 70141 3940556 ~ 3954908 (+)
LOC111191051 NA non-coding upstream 138942 3865940 ~ 3886107 (+)
G297367 NA non-coding upstream 194850 3826768 ~ 3830199 (+)
G297407 NA non-coding downstream 65551 4090911 ~ 4091300 (+)
G297405 NA non-coding downstream 102161 4127521 ~ 4166562 (+)
G297497 NA non-coding downstream 189935 4215295 ~ 4275823 (+)
G297516 NA non-coding downstream 327293 4352653 ~ 4355964 (+)
G297529 NA non-coding downstream 392616 4417976 ~ 4418769 (+)
LOC103030733 NA other upstream 384435 3550327 ~ 3640614 (+)
LOC111191028 grb2b,grb2,LOC108432081,LOC107719324,LOC108256494,LOC107672691,LOC107672145,LOC107723603 other upstream 876446 3042432 ~ 3148603 (+)
G296790 tcap,LOC108413611 other upstream 2663114 1359112 ~ 1361935 (+)
LOC103044283 LOC103044283,LOC108412482 other upstream 2734629 1287516 ~ 1290420 (+)
G296679 tlk2,LOC108413572,LOC107660745 other upstream 2824261 1191763 ~ 1200788 (+)
LOC103041102 LOC108440983,LOC108258030,LOC107718582,LOC107661664,LOC107715658,LOC107695723,LOC107550253 other downstream 227656 4253016 ~ 4299447 (+)
znf653 znf653,LOC106601361,LOC107553636,LOC104961106,LOC103393609 other downstream 394637 4419997 ~ 4434071 (+)
LOC111191039 NA other downstream 625283 4650643 ~ 4675621 (+)
LOC103033323 NA other downstream 1677152 5702512 ~ 5711874 (+)

Expression


Co-expression Network