G297492


Basic Information

Item Value
gene id G297492
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NW_019172828.1
NCBI id APWO02000046.1
chromosome length 5964967
location 4599689 ~ 4600615 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU409147
tttttttttaatttgccttgaaggcataaaaaagtcatgaaaaaataatggaaattcattggttaaaaagtgtatgaaccctgttgaTCAAACTGCACATCGtcgctgtctaatgaaaaacacttatctccaaaacaccaaatttacagaaaagagaaaaaaccttgtacattttcaatggaagtcaatgtaaaaaaaagtttatttcaggtcattttgaagagtttctattggtccgttcatcaagaaattttggcacagtgtaagggacagtttgtctgttctaattatgtagtaaactaaaaatcgattaaaaaatggagataagtgtttttcataggacagcgacgacaTGAGAAAACTacacagagatccacagctgTTTACATCCACATCTCTACAGACAACAAAACTAGTAGTGgacatgttaaataaaaaaaaatggggacATATAGAGACAATGTGAATTATACACGTGAAATATAATAGTGGGCACCCACCAATAAAACCCCATGAAagtattctatatatatttcagaaGGACCCTGAGGATGTAGCCCATCTACAGATATGTGCTGTATGTTGTTTGTAAAtcagtattaaaatataaaggaGGATTTTAGAGAGGAAGTTTATGGATTTATGGGTTTATCTGCCAAGGACCCTGAAAAACCAGCTTATGACatactcaaaactcaaaaaggGAGGAGCCACTATggtgacatatatatatatatatatatattaagaagaatgtataatacagtaaatacagtaaatgtagtTTATACTTCTGTAACGCGTgaccagacgggaggcggacgtaaatgcgggtaagacagactttaataaataacaaataaacaaataaacaaacagggg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU409147 True 882 lncRNA 0.33 2 4599689 4600615

Neighbor

gene id symbol gene type direction distance location
LOC111191035 LOC108412261,LOC108278278 coding upstream 884 4511409 ~ 4598805 (+)
LOC103021497 NA coding upstream 91204 4486904 ~ 4508485 (+)
epor NA coding upstream 184998 4401640 ~ 4414691 (+)
LOC103038197 rab3d,LOC108440987 coding upstream 206823 4367718 ~ 4392866 (+)
tmem205 tmem205 coding upstream 236085 4356987 ~ 4363604 (+)
LOC111191037 LOC108441001,LOC108276218,LOC106606473 coding downstream 108849 4709464 ~ 4711739 (+)
LOC103025123 fam173a coding downstream 126072 4726687 ~ 4732562 (+)
xpo6 xpo6 coding downstream 134053 4734668 ~ 4770755 (+)
nme4 LOC108440994,LOC108276282,LOC105894955 coding downstream 173028 4773643 ~ 4789683 (+)
gadd45gip1 NA coding downstream 470789 5071404 ~ 5073183 (+)
G297551 NA non-coding upstream 69623 4529089 ~ 4530066 (+)
G297549 NA non-coding upstream 84883 4514266 ~ 4514806 (+)
G297544 NA non-coding upstream 118398 4480885 ~ 4481291 (+)
LOC111191048 NA non-coding upstream 121920 4458455 ~ 4477769 (+)
LOC111191027 NA non-coding upstream 156595 4440344 ~ 4443094 (+)
G297490 NA non-coding downstream 734 4601349 ~ 4605869 (+)
G297561 NA non-coding downstream 53719 4654334 ~ 4658649 (+)
G297571 NA non-coding downstream 117164 4717779 ~ 4788076 (+)
G297580 NA non-coding downstream 195379 4795994 ~ 4802293 (+)
LOC111191040 NA non-coding downstream 201687 4802302 ~ 4806391 (+)
znf653 znf653,LOC106601361,LOC107553636,LOC104961106,LOC103393609 other upstream 165618 4419997 ~ 4434071 (+)
LOC103041102 LOC108440983,LOC108258030,LOC107718582,LOC107661664,LOC107715658,LOC107695723,LOC107550253 other upstream 300242 4253016 ~ 4299447 (+)
LOC103030733 NA other upstream 959075 3550327 ~ 3640614 (+)
LOC111191028 grb2b,grb2,LOC108432081,LOC107719324,LOC108256494,LOC107672691,LOC107672145,LOC107723603 other upstream 1451086 3042432 ~ 3148603 (+)
G296790 tcap,LOC108413611 other upstream 3237754 1359112 ~ 1361935 (+)
LOC111191039 NA other downstream 50028 4650643 ~ 4675621 (+)
LOC103033323 NA other downstream 1101897 5702512 ~ 5711874 (+)

Expression


Co-expression Network